Rh4DG072100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
10703567 .. 10707805
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG072100.1

Sequence Viewer

Length: 531 bp
ATGGAAGGAAGTGAAGGTGAAGCAGACTTTCTTTGGCTTGACAGTGATGGGAGCCAAAAGATTTTCACGCTCTATGTCTCTCTCTCTCAGTCTCTATGTTTATCAAATTTCAAGCCACAAAGCAAACCCTTTGAAAAGCAAGGCGATGCAAATGAAAAAGGTTCTCAAAATGTTCAGCAAGATGGCAATGCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCAATTCTAATGGACATAGTTATGAAAATGTTCACAATGAGGAGCATCATGAGATTCCATCTCAACAATCACTTGTGAAAGCACCTTTTGTTTCATCGCAACCACTTCCATCACCTCTAAATTTCTCACAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCTATTGGATCATTCTTAGCTTCCTTCTCCATGATGTACACTGATCCTATAACAGGGAGGCCAAAGAAGCAAGTTGCATTCAGAAATCCTAAGAATTCTATGTCAACTGAGAATGCAAGCAAGCCTATTTGGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.63

Weight (kDa)

5.71

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 406, 428
AcsI RAATTY 4 cut(s) 106, 349, 363, 484
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 3 cut(s) 112, 134, 377
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
Alw26I GTCTC 3 cut(s) 82, 96, 517
AlwI GGATC 2 cut(s) 406, 428
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 4 cut(s) 106, 349, 363, 484
Asp700I GAANNNNTTC 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 29, 333
BccI CCATC 4 cut(s) 41, 176, 295, 346
BcoDI GTCTC 3 cut(s) 82, 96, 517
BlpI GCTNAGC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 53
BmsI GCATC 2 cut(s) 136, 283
BpmI CTGGAG 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 517
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 371
Bse3DI GCAATG 2 cut(s) 193, 230
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMI GCAATG 2 cut(s) 193, 230
BseMII CTCAG 3 cut(s) 101, 233, 489
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 284
BshFI GGCC 1 cut(s) 451
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 3 cut(s) 82, 96, 517
BsmI GAATGC 4 cut(s) 213, 220, 467, 508
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 517
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 2 cut(s) 398, 433
Bsp1720I GCTNAGC 1 cut(s) 219
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 3 cut(s) 100, 232, 490
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 2 cut(s) 406, 428
BspTNI GGTCTC 1 cut(s) 517
BsrDI GCAATG 2 cut(s) 193, 230
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 1 cut(s) 371
BssMI GATC 2 cut(s) 398, 433
Bst4CI ACNGT 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 508, 512
BstDEI CTNAG 5 cut(s) 87, 219, 406, 480, 498
BstENI CCTNNNNNAGG 1 cut(s) 441
BstKTI GATC 2 cut(s) 401, 436
BstMAI GTCTC 3 cut(s) 82, 96, 517
BstMBI GATC 2 cut(s) 398, 433
BstMWI GCNNNNNNNGC 1 cut(s) 457
BsuRI GGCC 1 cut(s) 451
BtgZI GCGATG 2 cut(s) 159, 309
BtsIMutI CAGTG 2 cut(s) 49, 429
Cac8I GCNNGC 2 cut(s) 508, 512
CciI TCATGA 1 cut(s) 277
Csp6I GTAC 1 cut(s) 427
CviAII CATG 2 cut(s) 278, 421
CviJI RGCY 6 cut(s) 37, 54, 115, 410, 451, 514
CviKI_1 RGCY 6 cut(s) 37, 54, 115, 410, 451, 514
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 5 cut(s) 87, 219, 406, 480, 498
DpnI GATC 2 cut(s) 400, 435
DpnII GATC 2 cut(s) 398, 433
Eco31I GGTCTC 1 cut(s) 517
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 484
FaeI CATG 2 cut(s) 281, 424
FaiI YATR 9 cut(s) 75, 97, 204, 246, 252, 279, 422, 440, 491
FatI CATG 2 cut(s) 277, 420
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 451
Hin1II CATG 2 cut(s) 281, 424
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HinfI GANTC 1 cut(s) 283
HphI GGTGA 2 cut(s) 29, 333
Hpy166II GTNNAC 3 cut(s) 262, 429, 495
Hpy188I TCNGA 1 cut(s) 473
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 3 cut(s) 262, 429, 495
HpyAV CCTTC 2 cut(s) 8, 424
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 5 cut(s) 149, 191, 211, 467, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 5 cut(s) 87, 219, 406, 480, 498
Hsp92II CATG 2 cut(s) 281, 424
Kzo9I GATC 2 cut(s) 398, 433
LmnI GCTCC 2 cut(s) 51, 271
LpnPI CCDG 2 cut(s) 384, 429
LweI GCATC 2 cut(s) 136, 283
MalI GATC 2 cut(s) 400, 435
MboI GATC 2 cut(s) 398, 433
MluCI AATT 5 cut(s) 106, 232, 349, 363, 484
MnlI CCTC 4 cut(s) 262, 354, 378, 441
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 1 cut(s) 529
MslI CAYNNNNRTG 1 cut(s) 249
Mva1269I GAATGC 4 cut(s) 213, 220, 467, 508
MwoI GCNNNNNNNGC 1 cut(s) 457
NdeII GATC 2 cut(s) 398, 433
NlaIII CATG 2 cut(s) 281, 424
NlaIV GGNNCC 1 cut(s) 53
PagI TCATGA 1 cut(s) 277
PctI GAATGC 4 cut(s) 213, 220, 467, 508
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 53
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 529
Sau3AI GATC 2 cut(s) 398, 433
SetI ASST 7 cut(s) 19, 163, 316, 346, 394, 412, 529
SfaNI GCATC 2 cut(s) 136, 283
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 5 cut(s) 106, 232, 349, 363, 484
TaaI ACNGT 1 cut(s) 44
TasI AATT 5 cut(s) 106, 232, 349, 363, 484
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 529
Tru9I TTAA 1 cut(s) 529
TscAI CASTG 2 cut(s) 49, 436
TspDTI ATGAA 4 cut(s) 168, 213, 267, 312
TspRI CASTG 2 cut(s) 49, 436
XagI CCTNNNNNAGG 1 cut(s) 441
XapI RAATTY 4 cut(s) 106, 349, 363, 484
XmnI GAANNNNTTC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.