Rh3AG293200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000691
Physical Location & Seq
Reverse (-)
35528226 .. 35529567
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG293200.1

Sequence Viewer

Length: 318 bp
ATGTATTCTGGATATGTGCAGCAAACTGAAAATTTTTTGCAGGTACCAGCAACCTCAAATATTGCAAGTGCTTTATCTCAACCAGTGATCTCATCATCATCTCTGACTCAAGTTAACATTCAACCTCAGTCTTGTTCACAGCAAACTGTTATCAGATCATCCCATAATTCCAAGACATTCGTATGTCCTAACACAAGGATGTTAATGAAGAGCAAGTCAGTAGCACAAAAACCTAAGCTTGTGACAAGAAGCAACACAAGTGGAAGAGCCCAGCAAGGACCAATGGAGGGTTCCAACAAGAGAATTTGGAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.53

Weight (kDa)

10.52

Isoelectric Point (pI)

69.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AcsI RAATTY 2 cut(s) 31, 303
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 1 cut(s) 122
AjuI GAANNNNNNNTTGG 2 cut(s) 274, 306
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 2 cut(s) 31, 303
Asp718I GGTACC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 278
AvaII GGWCC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 31
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 45, 292
Bpu10I CCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 83
BseGI GGATG 2 cut(s) 158, 204
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 87, 155
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 45, 292
BspMI ACCTGC 1 cut(s) 31
BspQI GCTCTTC 2 cut(s) 203, 259
BspT107I GGYRCC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 83
BssMI GATC 2 cut(s) 87, 155
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 203, 259
BstDEI CTNAG 2 cut(s) 126, 234
BstF5I GGATG 2 cut(s) 158, 204
BstKTI GATC 2 cut(s) 90, 158
BstMBI GATC 2 cut(s) 87, 155
BstV1I GCAGC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 158, 204
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 44
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 1 cut(s) 315
CviJI RGCY 3 cut(s) 238, 269, 313
CviKI_1 RGCY 3 cut(s) 238, 269, 313
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 126, 234
DpnI GATC 2 cut(s) 89, 157
DpnII GATC 2 cut(s) 87, 155
Eam1104I CTCTTC 2 cut(s) 203, 259
EarI CTCTTC 2 cut(s) 203, 259
Eco24I GRGCYC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 271
FaeI CATG 1 cut(s) 318
FaiI YATR 4 cut(s) 15, 165, 184, 316
FatI CATG 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 2 cut(s) 145, 211
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
GsaI CCCAGC 1 cut(s) 274
Hin1II CATG 1 cut(s) 318
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 106
HpaI GTTAAC 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 115, 137
Hpy188I TCNGA 2 cut(s) 105, 155
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 2 cut(s) 115, 137
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 19, 40, 65
HpyF3I CTNAG 2 cut(s) 126, 234
Hsp92II CATG 1 cut(s) 318
KpnI GGTACC 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 87, 155
LguI GCTCTTC 2 cut(s) 203, 259
LpnPI CCDG 4 cut(s) 26, 60, 96, 284
Lsp1109I GCAGC 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 89, 157
MboI GATC 2 cut(s) 87, 155
MboII GAAGA 2 cut(s) 220, 276
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 3 cut(s) 31, 166, 303
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 3 cut(s) 64, 135, 280
MseI TTAA 2 cut(s) 114, 203
MslI CAYNNNNRTG 2 cut(s) 181, 197
NdeII GATC 2 cut(s) 87, 155
NlaIII CATG 1 cut(s) 318
NlaIV GGNNCC 2 cut(s) 45, 292
NmuCI GTSAC 1 cut(s) 241
PciSI GCTCTTC 2 cut(s) 203, 259
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 45, 292
PspPI GGNCC 1 cut(s) 278
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 2 cut(s) 181, 197
SapI GCTCTTC 2 cut(s) 203, 259
SaqAI TTAA 2 cut(s) 114, 203
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 87, 155
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 271
SetI ASST 5 cut(s) 45, 56, 127, 235, 240
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 2 cut(s) 181, 197
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 3 cut(s) 31, 166, 303
SspI AATATT 1 cut(s) 61
TaaI ACNGT 1 cut(s) 148
TasI AATT 3 cut(s) 31, 166, 303
Tru1I TTAA 2 cut(s) 114, 203
Tru9I TTAA 2 cut(s) 114, 203
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 221
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 2 cut(s) 31, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.