Rh3BG241800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000691
Physical Location & Seq
Forward (+)
22758553 .. 22764004
5452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG241800.1

Sequence Viewer

Length: 486 bp
ATGAAACCAGATTTATGGGGGGAAAAAGTTTTGCTTAAGCAGAAGGCATTCAAGAAGAACCTGAAACATCTGATAGTTCAACCATCAGAAACTGATGATCAGAGTGTCCATGTGGAGCAAGCTGAAAATGTTCAAAGTGATGTGCAAGTTGAAAGTGATATGCATTATGGATCATTGCAGCAAACTGCAAATGTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTTGCAGCCCACTGTTATCGGATCATCTCATACGTTTAGGACGTTTGTATGTCCTAAGACAGGGATGCCATTCAAGACCAAGTCAATAGCACATAAGCCTAAGCCTAAACTTGTGATAGGAACAAGCACTAAAGCAAGAGCCCAACAAGGACCAAAGAGGGTTCCAACAAGAAAATTTGGAAGCCGTGAACTTAATTTCTATTTTGGACTTGTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.76

Weight (kDa)

9.91

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 178, 295
AcsI RAATTY 1 cut(s) 440
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 326
AflII CTTAAG 1 cut(s) 35
AgsI TTSAA 5 cut(s) 52, 80, 134, 152, 340
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 2 cut(s) 178, 295
AlwNI CAGNNNCTG 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 178, 271
ApoI RAATTY 1 cut(s) 440
Asp700I GAANNNNTTC 2 cut(s) 47, 129
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 237
AvaII GGWCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 190, 283
BccI CCATC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 435
BclI TGATCA 1 cut(s) 97
BfrI CTTAAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 179, 272
BlsI GCNGC 2 cut(s) 180, 273
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 429
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 366
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 173
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 190, 283
BslI CCNNNNNNNGG 1 cut(s) 326
BsmI GAATGC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 4 cut(s) 97, 170, 237, 287
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 2 cut(s) 178, 295
BspTI CTTAAG 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 173
BssMI GATC 4 cut(s) 97, 170, 237, 287
Bst4CI ACNGT 1 cut(s) 280
BstAFI CTTAAG 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 258, 321, 366
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 4 cut(s) 100, 173, 240, 290
BstMBI GATC 4 cut(s) 97, 170, 237, 287
BstV1I GCAGC 2 cut(s) 190, 283
BstV2I GAAGAC 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 120
CaiI CAGNNNCTG 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 194
CviAII CATG 1 cut(s) 110
CviJI RGCY 6 cut(s) 122, 274, 364, 370, 407, 450
CviKI_1 RGCY 6 cut(s) 122, 274, 364, 370, 407, 450
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 3 cut(s) 258, 321, 366
DpnI GATC 4 cut(s) 99, 172, 239, 289
DpnII GATC 4 cut(s) 97, 170, 237, 287
Eco24I GRGCYC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 416
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 409
FaeI CATG 1 cut(s) 113
FaiI YATR 7 cut(s) 16, 111, 161, 168, 297, 316, 360
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 1 cut(s) 109
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 179, 272
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 179, 272
GluI GCNGC 2 cut(s) 179, 272
Hin1II CATG 1 cut(s) 113
HphI GGTGA 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 4 cut(s) 72, 88, 102, 287
Hpy188III TCNNGA 2 cut(s) 52, 340
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 2 cut(s) 299, 308
HpyCH4V TGCA 6 cut(s) 145, 163, 178, 188, 215, 271
HpyF3I CTNAG 3 cut(s) 258, 321, 366
HpySE526I ACGT 2 cut(s) 299, 308
Hsp92II CATG 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 4 cut(s) 97, 170, 237, 287
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 21, 74, 312
Lsp1109I GCAGC 2 cut(s) 190, 283
LweI GCATC 1 cut(s) 321
MaeII ACGT 2 cut(s) 299, 308
MalI GATC 4 cut(s) 99, 172, 239, 289
MboI GATC 4 cut(s) 97, 170, 237, 287
MboII GAAGA 2 cut(s) 67, 255
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 3 cut(s) 207, 440, 460
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 4 cut(s) 214, 261, 267, 417
Mph1103I ATGCAT 1 cut(s) 165
MroXI GAANNNNTTC 2 cut(s) 47, 129
MseI TTAA 2 cut(s) 36, 459
MspCI CTTAAG 1 cut(s) 35
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 47
NdeII GATC 4 cut(s) 97, 170, 237, 287
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 429
NsiI ATGCAT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PctI GAATGC 1 cut(s) 47
PdmI GAANNNNTTC 2 cut(s) 47, 129
PflFI GACNNNGTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 180, 273
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 92
PsyI GACNNNGTC 1 cut(s) 346
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 36, 459
SatI GCNGC 2 cut(s) 179, 272
Sau3AI GATC 4 cut(s) 97, 170, 237, 287
Sau96I GGNCC 1 cut(s) 416
SduI GDGCHC 1 cut(s) 409
SetI ASST 6 cut(s) 63, 124, 253, 259, 302, 311
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 3 cut(s) 207, 440, 460
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 2 cut(s) 302, 311
TasI AATT 3 cut(s) 207, 440, 460
Tru1I TTAA 2 cut(s) 36, 459
Tru9I TTAA 2 cut(s) 36, 459
TscAI CASTG 1 cut(s) 283
TseI GCWGC 2 cut(s) 178, 271
TspDTI ATGAA 2 cut(s) 17, 213
TspRI CASTG 1 cut(s) 283
Tth111I GACNNNGTC 1 cut(s) 346
Vha464I CTTAAG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 416
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 1 cut(s) 440
XmnI GAANNNNTTC 2 cut(s) 47, 129
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.