Prupe.1G198800_v2.0.a1

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000309
Physical Location & Seq
Reverse (-)
19153060 .. 19154299
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G198800.1

Sequence Viewer

Length: 894 bp
ATGACCTTTATTTTTTTGTTCCATTTGCTGTCCATTTTTGCACCATTCATTAACTTTGATGAAGTTGATCTGGGGGTTCACAAGGGTGACCACATCCAAGGCATCCATGACCTCAAACTATACCTCGAAAAGTTTGGATACTTAAGCTATGCCCATGCAAAGCACAACCCTCATGCCGATGATGACGATTTCGACGACTTCTTAGAGTTGGCCGTAAAGACATATCAACTCAATTACCACCTCAAGACCACCGGAACATTGGATGCCAAAACGGTGTCAAAAATGATGATGTCTCGCTGTGGCGTGGCGGATATCATCAATGGTGCCACCTCAATGCAATCGGGAAAGAAAAAGCACCGCGGTCACAACCACGATCATGATTCCAATGTTTATGGAGTATCTCACTATTCTTTCTTCAAGGGAAAGCTAAAATGGCCTCGTTCTAAGCACCATCTAACATTTGCATTTCTTCCTACCACCCCAACCGAAGCCATGGGGCCGATTTCAAGGGCTTTTCGGACATGGGCCACCAACACACACTTCAGGTTTAGTCGGTCGCAAAACTATAAGCGGGCTGACATAAAGATTAGCTTCGAATACGGTGATCATGGAGATGGGAGCTCATTTGATGGGCCTGGTGGGGTTTTGGCCCATGCTTATGCTCCAACATATGGGAAATTCCATTATGATGCTGAGGAGCCTTGGTCTGTGGGTGCTTTGGAAGGTTATTATGACTTGGAGACTGTGGCTTTGCATGAAATTGGTCACCTCCTGGGACTTGGGCATAGCTCAGTTGAGGGAGCTGTCATGTATCCCTACATAGCTTCTGGAGCCACCAACTTGTATTTGCATGACGACGATATTCGAGGAATTAAAGTTTTATACAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

298

Amino Acids

33.5

Weight (kDa)

6.53

Isoelectric Point (pI)

26.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 671
AccII CGCG 1 cut(s) 360
AciI CCGC 4 cut(s) 308, 358, 360, 571
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 1 cut(s) 526
AfiI CCNNNNNNNGG 1 cut(s) 671
AflII CTTAAG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 418, 507
AjnI CCWGG 2 cut(s) 634, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AleI CACNNNNGTG 1 cut(s) 84
AluBI AGCT 7 cut(s) 147, 427, 591, 621, 789, 803, 824
AluI AGCT 7 cut(s) 147, 427, 591, 621, 789, 803, 824
Alw21I GWGCWC 1 cut(s) 623
Alw26I GTCTC 2 cut(s) 297, 734
AoxI GGCC 6 cut(s) 210, 434, 497, 525, 632, 648
ApoI RAATTY 1 cut(s) 677
ArsI GACNNNNNNTTYG 2 cut(s) 733, 765
AspS9I GGNCC 4 cut(s) 497, 525, 632, 649
AsuHPI GGTGA 3 cut(s) 98, 614, 758
AsuII TTCGAA 1 cut(s) 594
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 623
BbvCI CCTCAGC 1 cut(s) 693
BccI CCATC 3 cut(s) 459, 608, 623
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 636, 773
BciVI GTATCC 2 cut(s) 131, 822
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 297, 734
BfrI CTTAAG 1 cut(s) 142
BfuI GTATCC 2 cut(s) 131, 822
Bme1390I CCNGG 2 cut(s) 636, 773
BmgT120I GGNCC 4 cut(s) 497, 525, 632, 649
BmiI GGNNCC 4 cut(s) 325, 498, 699, 832
BmrFI CCNGG 2 cut(s) 636, 773
BmsI GCATC 3 cut(s) 111, 253, 679
BpmI CTGGAG 1 cut(s) 849
Bpu10I CCTNAGC 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 227
BsaJI CCNNGG 5 cut(s) 97, 358, 492, 701, 772
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 1 cut(s) 671
BseBI CCWGG 2 cut(s) 636, 773
BseDI CCNNGG 5 cut(s) 97, 358, 492, 701, 772
BseGI GGATG 3 cut(s) 93, 102, 268
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMII CTCAG 2 cut(s) 684, 804
BseRI GAGGAG 1 cut(s) 710
Bsh1236I CGCG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 557
BshFI GGCC 6 cut(s) 212, 436, 499, 527, 634, 650
BshNI GGYRCC 1 cut(s) 323
BsiEI CGRYCG 1 cut(s) 557
BsiHKAI GWGCWC 1 cut(s) 623
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 789
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 2 cut(s) 297, 734
BsmFI GGGAC 1 cut(s) 789
BsnI GGCC 6 cut(s) 212, 436, 499, 527, 634, 650
Bsp119I TTCGAA 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 623
Bsp143I GATC 3 cut(s) 67, 373, 604
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 4 cut(s) 308, 358, 360, 571
BspANI GGCC 6 cut(s) 212, 436, 499, 527, 634, 650
BspCNI CTCAG 2 cut(s) 685, 803
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 4 cut(s) 325, 498, 699, 832
BspT104I TTCGAA 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 323
BspTI CTTAAG 1 cut(s) 142
BssECI CCNNGG 5 cut(s) 97, 358, 492, 701, 772
BssMI GATC 3 cut(s) 67, 373, 604
BssT1I CCWWGG 3 cut(s) 97, 492, 701
Bst2UI CCWGG 2 cut(s) 636, 773
Bst4CI ACNGT 3 cut(s) 274, 602, 745
BstAFI CTTAAG 1 cut(s) 142
BstBI TTCGAA 1 cut(s) 594
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 4 cut(s) 202, 444, 693, 790
BstDSI CCRYGG 2 cut(s) 358, 492
BstEII GGTNACC 2 cut(s) 86, 764
BstF5I GGATG 3 cut(s) 93, 102, 268
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 3 cut(s) 70, 376, 607
BstMAI GTCTC 2 cut(s) 297, 734
BstMBI GATC 3 cut(s) 67, 373, 604
BstMCI CGRYCG 1 cut(s) 557
BstMWI GCNNNNNNNGC 2 cut(s) 433, 830
BstNI CCWGG 2 cut(s) 636, 773
BstPI GGTNACC 2 cut(s) 86, 764
BstSCI CCNGG 2 cut(s) 634, 771
BstUI CGCG 1 cut(s) 360
BsuI GTATCC 2 cut(s) 131, 822
BsuRI GGCC 6 cut(s) 212, 436, 499, 527, 634, 650
BtgI CCRYGG 2 cut(s) 358, 492
BtsCI GGATG 3 cut(s) 93, 102, 268
Cac8I GCNNGC 1 cut(s) 573
CciI TCATGA 1 cut(s) 376
Cfr13I GGNCC 4 cut(s) 497, 525, 632, 649
Cfr42I CCGCGG 1 cut(s) 361
DdeI CTNAG 4 cut(s) 202, 444, 693, 790
DpnI GATC 3 cut(s) 69, 375, 606
DpnII GATC 3 cut(s) 67, 373, 604
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 1 cut(s) 323
Ecl136II GAGCTC 1 cut(s) 621
Eco130I CCWWGG 3 cut(s) 97, 492, 701
Eco24I GRGCYC 1 cut(s) 623
Eco32I GATATC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 621
Eco57I CTGAAG 1 cut(s) 526
Eco91I GGTNACC 2 cut(s) 86, 764
EcoICRI GAGCTC 1 cut(s) 621
EcoO65I GGTNACC 2 cut(s) 86, 764
EcoRII CCWGG 2 cut(s) 634, 771
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 3 cut(s) 97, 492, 701
EcoT38I GRGCYC 1 cut(s) 623
ErhI CCWWGG 3 cut(s) 97, 492, 701
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 1 cut(s) 789
FauI CCCGC 1 cut(s) 564
FauNDI CATATG 1 cut(s) 670
FbaI TGATCA 1 cut(s) 604
FokI GGATG 3 cut(s) 80, 89, 275
FriOI GRGCYC 1 cut(s) 623
GsuI CTGGAG 1 cut(s) 849
HaeIII GGCC 6 cut(s) 212, 436, 499, 527, 634, 650
HapII CCGG 1 cut(s) 252
HinfI GANTC 1 cut(s) 380
HpaII CCGG 1 cut(s) 252
HphI GGTGA 3 cut(s) 98, 614, 758
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 5 cut(s) 244, 342, 377, 828, 891
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 197, 860
HpyAV CCTTC 1 cut(s) 716
HpyCH4III ACNGT 3 cut(s) 274, 602, 745
HpyCH4V TGCA 6 cut(s) 41, 158, 337, 464, 754, 850
HpyF10VI GCNNNNNNNGC 2 cut(s) 433, 830
HpyF3I CTNAG 4 cut(s) 202, 444, 693, 790
Ksp22I TGATCA 1 cut(s) 604
KspI CCGCGG 1 cut(s) 361
Kzo9I GATC 3 cut(s) 67, 373, 604
LmnI GCTCC 5 cut(s) 618, 667, 697, 800, 830
LpnPI CCDG 8 cut(s) 56, 265, 529, 621, 648, 758, 785, 813
LweI GCATC 3 cut(s) 111, 253, 679
MaeIII GTNAC 3 cut(s) 86, 362, 764
MalI GATC 3 cut(s) 69, 375, 606
MboI GATC 3 cut(s) 67, 373, 604
MboII GAAGA 2 cut(s) 406, 461
MhlI GDGCHC 1 cut(s) 623
MluCI AATT 4 cut(s) 232, 677, 759, 870
MmeI TCCRAC 1 cut(s) 689
MseI TTAA 3 cut(s) 51, 143, 873
MslI CAYNNNNRTG 7 cut(s) 84, 177, 332, 375, 612, 657, 687
MspA1I CMGCKG 1 cut(s) 360
MspCI CTTAAG 1 cut(s) 142
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 636, 773
MvaI CCWGG 2 cut(s) 636, 773
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 433, 830
NcoI CCATGG 1 cut(s) 492
NdeI CATATG 1 cut(s) 670
NdeII GATC 3 cut(s) 67, 373, 604
NlaIV GGNNCC 4 cut(s) 325, 498, 699, 832
NmuCI GTSAC 3 cut(s) 86, 362, 764
NspV TTCGAA 1 cut(s) 594
OliI CACNNNNGTG 1 cut(s) 84
PagI TCATGA 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 671
Psp124BI GAGCTC 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 634, 771
PspEI GGTNACC 2 cut(s) 86, 764
PspGI CCWGG 2 cut(s) 634, 771
PspN4I GGNNCC 4 cut(s) 325, 498, 699, 832
PspPI GGNCC 4 cut(s) 497, 525, 632, 649
RseI CAYNNNNRTG 7 cut(s) 84, 177, 332, 375, 612, 657, 687
SacI GAGCTC 1 cut(s) 623
SacII CCGCGG 1 cut(s) 361
SaqAI TTAA 3 cut(s) 51, 143, 873
Sau3AI GATC 3 cut(s) 67, 373, 604
Sau96I GGNCC 4 cut(s) 497, 525, 632, 649
ScrFI CCNGG 2 cut(s) 636, 773
SduI GDGCHC 1 cut(s) 623
SfaNI GCATC 3 cut(s) 111, 253, 679
Sfr303I CCGCGG 1 cut(s) 361
SfuI TTCGAA 1 cut(s) 594
SgrBI CCGCGG 1 cut(s) 361
SmiMI CAYNNNNRTG 7 cut(s) 84, 177, 332, 375, 612, 657, 687
SmlI CTYRAG 2 cut(s) 142, 242
SmoI CTYRAG 2 cut(s) 142, 242
Sse9I AATT 4 cut(s) 232, 677, 759, 870
SsiI CCGC 4 cut(s) 308, 358, 360, 571
SstI GAGCTC 1 cut(s) 623
StyD4I CCNGG 2 cut(s) 634, 771
StyI CCWWGG 3 cut(s) 97, 492, 701
TaaI ACNGT 3 cut(s) 274, 602, 745
TaqI TCGA 4 cut(s) 126, 192, 594, 865
TaqII GACCGA 1 cut(s) 543
TasI AATT 4 cut(s) 232, 677, 759, 870
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 3 cut(s) 51, 143, 873
Tru9I TTAA 3 cut(s) 51, 143, 873
TseFI GTSAC 3 cut(s) 86, 362, 764
Tsp45I GTSAC 3 cut(s) 86, 362, 764
TspDTI ATGAA 3 cut(s) 37, 75, 771
Van91I CCANNNNNTGG 1 cut(s) 671
Vha464I CTTAAG 1 cut(s) 142
XapI RAATTY 1 cut(s) 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.