Rorug02G0547300

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000309
Physical Location & Seq
Forward (+)
67545546 .. 67547593
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0547300.1

Sequence Viewer

Length: 303 bp
ATGGCTACTCTGGCAGCTGCCGCAGCTCGACAAGCCGCCAATTCACTCCGTCTGTCTTCGTCCAGAACCGCCGGTCAAGCATCTACTCTAATCCAGCGCCGTGGCCTCGCCGGCGCTGCAGATCACCATGGCCCGCCAAAGGTTAACTGCTGGTCCGACCCGATGAGCCCATCTAAATGGAAGGAGGAGCATTTCGTAATTGCCTCTTTGTCTGGATGGGGTCTGCTTATCTTTAGTAGTTACAAGTTTTTCACCGGAGGCAAAGGCAAGAAGGAAGAGAAACTGGTGGAAGCATCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

100

Amino Acids

10.7

Weight (kDa)

9.92

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 21, 36, 69, 134
AfiI CCNNNNNNNGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 17, 26
AluI AGCT 2 cut(s) 17, 26
AoxI GGCC 2 cut(s) 103, 130
ApeKI GCWGC 4 cut(s) 14, 17, 23, 116
AspLEI GCGC 2 cut(s) 99, 116
AspS9I GGNCC 2 cut(s) 131, 153
AsuHPI GGTGA 2 cut(s) 116, 244
AvaII GGWCC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 4 cut(s) 4, 26, 35, 103
BccI CCATC 2 cut(s) 178, 210
BceAI ACGGC 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 117
BfoI RGCGCY 2 cut(s) 100, 117
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 6 cut(s) 15, 18, 21, 24, 36, 117
BlsI GCNGC 6 cut(s) 16, 19, 22, 25, 37, 118
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 131, 153
BmsI GCATC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 100, 127
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 2 cut(s) 71, 110
Bse1I ACTGG 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 100, 127
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 4 cut(s) 4, 26, 35, 103
BshFI GGCC 2 cut(s) 105, 132
BsiSI CCGG 3 cut(s) 72, 111, 255
BslI CCNNNNNNNGG 1 cut(s) 139
BsnI GGCC 2 cut(s) 105, 132
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 121
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 4 cut(s) 21, 36, 69, 134
BspANI GGCC 2 cut(s) 105, 132
BspMAI CTGCAG 1 cut(s) 121
BsrFI RCCGGY 2 cut(s) 71, 110
BsrI ACTGG 1 cut(s) 288
BssAI RCCGGY 2 cut(s) 71, 110
BssECI CCNNGG 2 cut(s) 100, 127
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 112, 134
BstDSI CCRYGG 2 cut(s) 100, 127
BstF5I GGATG 1 cut(s) 221
BstH2I RGCGCY 2 cut(s) 100, 117
BstHHI GCGC 2 cut(s) 99, 116
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 7 cut(s) 11, 20, 23, 32, 77, 111, 116
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 4, 26, 35, 103
BstV2I GAAGAC 1 cut(s) 48
BstXI CCANNNNNNTGG 2 cut(s) 101, 177
BsuRI GGCC 2 cut(s) 105, 132
BtgI CCRYGG 2 cut(s) 100, 127
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 2 cut(s) 112, 134
CfoI GCGC 2 cut(s) 99, 116
Cfr10I RCCGGY 2 cut(s) 71, 110
Cfr13I GGNCC 2 cut(s) 131, 153
CviAII CATG 1 cut(s) 128
CviJI RGCY 7 cut(s) 5, 17, 26, 35, 105, 132, 168
CviKI_1 RGCY 7 cut(s) 5, 17, 26, 35, 105, 132, 168
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 1 cut(s) 131
FaiI YATR 1 cut(s) 129
FatI CATG 1 cut(s) 127
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 6 cut(s) 15, 18, 21, 24, 36, 117
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 6 cut(s) 15, 18, 21, 24, 36, 117
GlaI GCGC 2 cut(s) 98, 115
GluI GCNGC 6 cut(s) 15, 18, 21, 24, 36, 117
HaeII RGCGCY 2 cut(s) 100, 117
HaeIII GGCC 2 cut(s) 105, 132
HapII CCGG 3 cut(s) 72, 111, 255
HhaI GCGC 2 cut(s) 99, 116
Hin1II CATG 1 cut(s) 131
Hin6I GCGC 2 cut(s) 97, 114
HinP1I GCGC 2 cut(s) 97, 114
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 3 cut(s) 72, 111, 255
HphI GGTGA 2 cut(s) 116, 244
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 63, 213
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 175, 265
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 20, 23, 32, 77, 111, 116
Hsp92II CATG 1 cut(s) 131
HspAI GCGC 2 cut(s) 97, 114
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 8 cut(s) 76, 85, 107, 124, 136, 198, 268, 269
Lsp1109I GCAGC 4 cut(s) 4, 26, 35, 103
LweI GCATC 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 48, 287
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 2 cut(s) 40, 198
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 116, 178, 214, 251
MreI CGCCGGCG 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 175
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 3 cut(s) 72, 111, 255
MwoI GCNNNNNNNGC 7 cut(s) 11, 20, 23, 32, 77, 111, 116
NaeI GCCGGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 127
NdeII GATC 1 cut(s) 121
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 112
PkrI GCNGC 6 cut(s) 16, 19, 22, 25, 37, 118
PspPI GGNCC 2 cut(s) 131, 153
PstI CTGCAG 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 6 cut(s) 15, 18, 21, 24, 36, 117
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 2 cut(s) 131, 153
SduI GDGCHC 1 cut(s) 170
SetI ASST 3 cut(s) 19, 28, 144
SfaNI GCATC 1 cut(s) 89
SfcI CTRYAG 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 110
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 175
Sse9I AATT 2 cut(s) 40, 198
SsiI CCGC 4 cut(s) 21, 36, 69, 134
StyI CCWWGG 1 cut(s) 127
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 40, 198
TauI GCSGC 2 cut(s) 23, 38
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 4 cut(s) 14, 17, 23, 116
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.