Rw0G018370

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00818
OG0000309
Physical Location & Seq
Reverse (-)
17523 .. 37682
20160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018370.1

Sequence Viewer

Length: 912 bp
ATGGCATCCAAATCTAATCTTTCTCTCTTCACTGTCACTCTCCTCGCCCTTCTTACTCTCCACTCTTATGCAATTGCTTCTCATCCCCACAACAAGAGCTCTTCCCCATTTGAGTTCCTTGAGCATCTCAAGGGTTGCCACAAAGGTGATGAGGTCAAGGGCATCAACGATCTCAAAAAATACCTAGAAAAGTACGGTTACTTGAACTACAAGAACCACAGTCATTCGGACGACGATGATTTTGATGACCTTTTGGAGGAAGCCATCAAGACTTACCAGGTCAATTACCACCTCAAGTCCACCGGAACACTGGACGGCAAAACAGTGTCGAAGATGATGACACCTCGTTGTGGCGTGCCGGATATCATCAATGGCACCTCTATTCGATATTGTTTTACAGGTTCAATTCATACCACTGCTCACTACTCATTTTTCCAGGGAAATCCAAAATGGCCTTCCTCAAAATACCATCTCACTTACGGTTTTCTCCCCAACACCCCATCCGAAGCCATGGGCGCTGTAGCACGGGCTTTTGCAACATGGGCTGGAAACACTCACTTCACGTTCAGCCAGTCCCAAAGTTACGAGAATGCGGATTTGAAGATTAGTTTTCATAAGGGTGATCATGGAGACCGGAATTCATTTGATGGCCCGGGTGGGGTCCTAGCCCATGCTTTTAGCCCGTCGGATGGAAGATTCCACTACGACGCGGATGAGACTTGGTCTGTGGGTGCAACTCCAGGTGCCATGGACTTGGAGAGTGTGGCTTTGCATGAAATAGGGCACCTTCTGGGACTTGGACATAGCTCAGTGGAGGGAGCTATCATGGCCCCAGTTATTCCCTCGGGAGTGGCTCGAATAAGTTTGACTGGGGACGATGTTCAAGGAATAAGGGTTTTATACAACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

303

Amino Acids

33.18

Weight (kDa)

6.14

Isoelectric Point (pI)

26.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 55 - 112 2.7e-10 Putative peptidoglycan binding domain
Peptidase_M10 PF00413 150 - 301 1.1e-46 Matrixin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 374, 743, 783
AccII CGCG 1 cut(s) 710
AciI CCGC 2 cut(s) 593, 710
AcsI RAATTY 1 cut(s) 637
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 4 cut(s) 256, 350, 658, 689
AgsI TTSAA 4 cut(s) 205, 405, 601, 884
AjnI CCWGG 3 cut(s) 276, 435, 739
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 3 cut(s) 99, 807, 821
AluI AGCT 3 cut(s) 99, 807, 821
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 624, 710
Ama87I CYCGRG 2 cut(s) 652, 844
AoxI GGCC 3 cut(s) 452, 649, 828
ApoI RAATTY 1 cut(s) 637
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 3 cut(s) 650, 661, 829
AsuC2I CCSGG 2 cut(s) 653, 654
AsuHPI GGTGA 2 cut(s) 158, 632
AvaI CYCGRG 2 cut(s) 652, 844
AvaII GGWCC 1 cut(s) 661
BaeGI GKGCMC 1 cut(s) 786
BanI GGYRCC 3 cut(s) 374, 743, 783
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BccI CCATC 5 cut(s) 272, 477, 508, 641, 683
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 3 cut(s) 278, 437, 741
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 2 cut(s) 653, 654
BcoDI GTCTC 2 cut(s) 624, 710
BfaI CTAG 2 cut(s) 185, 665
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 519
Bme1390I CCNGG 5 cut(s) 278, 437, 653, 654, 741
Bme18I GGWCC 1 cut(s) 661
BmeT110I CYCGRG 2 cut(s) 652, 844
BmgT120I GGNCC 3 cut(s) 650, 661, 829
BmiI GGNNCC 5 cut(s) 376, 662, 745, 785, 831
BmrFI CCNGG 5 cut(s) 278, 437, 653, 654, 741
BmrI ACTGGG 2 cut(s) 827, 879
BmsI GCATC 3 cut(s) 14, 133, 171
BmuI ACTGGG 2 cut(s) 827, 879
BpmI CTGGAG 1 cut(s) 723
BpuEI CTTGAG 3 cut(s) 113, 140, 278
BpuMI CCSGG 2 cut(s) 653, 654
BsaI GGTCTC 1 cut(s) 624
BsaJI CCNNGG 5 cut(s) 436, 510, 652, 747, 843
BsaWI WCCGGW 2 cut(s) 302, 633
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 350, 658, 689
Bse1I ACTGG 4 cut(s) 315, 571, 833, 874
BseBI CCWGG 3 cut(s) 278, 437, 741
BseDI CCNNGG 5 cut(s) 436, 510, 652, 747, 843
BseGI GGATG 5 cut(s) 5, 82, 500, 694, 718
BseLI CCNNNNNNNGG 4 cut(s) 256, 350, 658, 689
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 4 cut(s) 315, 571, 833, 874
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 786
Bsh1236I CGCG 1 cut(s) 710
BshFI GGCC 3 cut(s) 454, 651, 830
BshNI GGYRCC 3 cut(s) 374, 743, 783
BsiHKAI GWGCWC 1 cut(s) 101
BsiHKCI CYCGRG 2 cut(s) 652, 844
BsiSI CCGG 4 cut(s) 303, 359, 634, 653
BslFI GGGAC 3 cut(s) 559, 807, 887
BslI CCNNNNNNNGG 4 cut(s) 256, 350, 658, 689
BsmAI GTCTC 2 cut(s) 624, 710
BsmFI GGGAC 3 cut(s) 559, 807, 887
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 3 cut(s) 454, 651, 830
Bso31I GGTCTC 1 cut(s) 624
BsoBI CYCGRG 2 cut(s) 652, 844
Bsp1286I GDGCHC 2 cut(s) 101, 786
Bsp143I GATC 2 cut(s) 169, 622
Bsp19I CCATGG 2 cut(s) 510, 747
BspACI CCGC 2 cut(s) 593, 710
BspANI GGCC 3 cut(s) 454, 651, 830
BspCNI CTCAG 1 cut(s) 821
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 5 cut(s) 376, 662, 745, 785, 831
BspQI GCTCTTC 1 cut(s) 106
BspT107I GGYRCC 3 cut(s) 374, 743, 783
BspTNI GGTCTC 1 cut(s) 624
BsrI ACTGG 4 cut(s) 315, 571, 833, 874
BssECI CCNNGG 5 cut(s) 436, 510, 652, 747, 843
BssMI GATC 2 cut(s) 169, 622
BssT1I CCWWGG 2 cut(s) 510, 747
Bst2UI CCWGG 3 cut(s) 278, 437, 741
Bst4CI ACNGT 5 cut(s) 34, 197, 221, 325, 482
Bst6I CTCTTC 2 cut(s) 32, 106
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 808
BstDSI CCRYGG 2 cut(s) 510, 747
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 5 cut(s) 5, 82, 500, 694, 718
BstFNI CGCG 1 cut(s) 710
BstH2I RGCGCY 1 cut(s) 519
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 2 cut(s) 172, 625
BstMAI GTCTC 2 cut(s) 624, 710
BstMBI GATC 2 cut(s) 169, 622
BstMWI GCNNNNNNNGC 3 cut(s) 515, 542, 827
BstNI CCWGG 3 cut(s) 278, 437, 741
BstSCI CCNGG 5 cut(s) 276, 435, 651, 652, 739
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 786
BstUI CGCG 1 cut(s) 710
BstXI CCANNNNNNTGG 1 cut(s) 754
BsuRI GGCC 3 cut(s) 454, 651, 830
BtgI CCRYGG 2 cut(s) 510, 747
BtsCI GGATG 5 cut(s) 5, 82, 500, 694, 718
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 5 cut(s) 30, 308, 330, 414, 816
Cac8I GCNNGC 1 cut(s) 356
CfoI GCGC 1 cut(s) 518
Cfr13I GGNCC 3 cut(s) 650, 661, 829
Cfr9I CCCGGG 1 cut(s) 652
CseI GACGC 1 cut(s) 716
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 193
CviAII CATG 7 cut(s) 511, 540, 626, 671, 748, 773, 826
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 808
DpnI GATC 2 cut(s) 171, 624
DpnII GATC 2 cut(s) 169, 622
Eam1104I CTCTTC 2 cut(s) 32, 106
EarI CTCTTC 2 cut(s) 32, 106
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 510, 747
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 624
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 661
Eco53kI GAGCTC 1 cut(s) 99
Eco88I CYCGRG 2 cut(s) 652, 844
EcoICRI GAGCTC 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 661
EcoRI GAATTC 1 cut(s) 637
EcoRII CCWGG 3 cut(s) 276, 435, 739
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 2 cut(s) 510, 747
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 2 cut(s) 510, 747
FaeI CATG 7 cut(s) 514, 543, 629, 674, 751, 776, 829
FaqI GGGAC 3 cut(s) 559, 807, 887
FatI CATG 7 cut(s) 510, 539, 625, 670, 747, 772, 825
FbaI TGATCA 1 cut(s) 622
FokI GGATG 4 cut(s) 69, 487, 701, 725
FriOI GRGCYC 1 cut(s) 101
FspBI CTAG 2 cut(s) 185, 665
GlaI GCGC 1 cut(s) 517
GsuI CTGGAG 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 519
HaeIII GGCC 3 cut(s) 454, 651, 830
HapII CCGG 4 cut(s) 303, 359, 634, 653
HgaI GACGC 1 cut(s) 716
HhaI GCGC 1 cut(s) 518
Hin1II CATG 7 cut(s) 514, 543, 629, 674, 751, 776, 829
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HinfI GANTC 1 cut(s) 696
HpaII CCGG 4 cut(s) 303, 359, 634, 653
HphI GGTGA 2 cut(s) 158, 632
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 4 cut(s) 229, 505, 688, 911
Hpy188III TCNNGA 2 cut(s) 268, 846
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 3 cut(s) 236, 688, 710
HpyAV CCTTC 3 cut(s) 59, 465, 797
HpyCH4III ACNGT 5 cut(s) 34, 197, 221, 325, 482
HpyCH4IV ACGT 2 cut(s) 563, 906
HpyCH4V TGCA 4 cut(s) 71, 536, 734, 772
HpyF10VI GCNNNNNNNGC 3 cut(s) 515, 542, 827
HpyF3I CTNAG 1 cut(s) 808
HpySE526I ACGT 2 cut(s) 563, 906
Hsp92II CATG 7 cut(s) 514, 543, 629, 674, 751, 776, 829
HspAI GCGC 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 2 cut(s) 169, 622
LguI GCTCTTC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 818
LweI GCATC 3 cut(s) 14, 133, 171
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 2 cut(s) 185, 665
MaeII ACGT 2 cut(s) 563, 906
MaeIII GTNAC 3 cut(s) 34, 197, 581
MalI GATC 2 cut(s) 171, 624
MboI GATC 2 cut(s) 169, 622
MboII GAAGA 5 cut(s) 19, 93, 343, 613, 705
MfeI CAATTG 1 cut(s) 72
MhlI GDGCHC 2 cut(s) 101, 786
MluCI AATT 4 cut(s) 72, 283, 405, 637
MmeI TCCRAC 1 cut(s) 666
MnlI CCTC 9 cut(s) 53, 145, 250, 302, 354, 388, 469, 808, 853
MslI CAYNNNNRTG 3 cut(s) 66, 144, 618
MspI CCGG 4 cut(s) 303, 359, 634, 653
MspR9I CCNGG 5 cut(s) 278, 437, 653, 654, 741
MunI CAATTG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 595
MvaI CCWGG 3 cut(s) 278, 437, 741
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 3 cut(s) 515, 542, 827
NciI CCSGG 2 cut(s) 653, 654
NcoI CCATGG 2 cut(s) 510, 747
NdeII GATC 2 cut(s) 169, 622
NlaIII CATG 7 cut(s) 514, 543, 629, 674, 751, 776, 829
NlaIV GGNNCC 5 cut(s) 376, 662, 745, 785, 831
NmuCI GTSAC 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 106
PctI GAATGC 1 cut(s) 595
PfeI GAWTC 1 cut(s) 696
PflFI GACNNNGTC 1 cut(s) 721
PpuMI RGGWCCY 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 3 cut(s) 276, 435, 739
PspGI CCWGG 3 cut(s) 276, 435, 739
PspN4I GGNNCC 5 cut(s) 376, 662, 745, 785, 831
PspPI GGNCC 3 cut(s) 650, 661, 829
PspPPI RGGWCCY 1 cut(s) 661
PsyI GACNNNGTC 1 cut(s) 721
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 3 cut(s) 66, 144, 618
SacI GAGCTC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 106
Sau3AI GATC 2 cut(s) 169, 622
Sau96I GGNCC 3 cut(s) 650, 661, 829
ScrFI CCNGG 5 cut(s) 278, 437, 653, 654, 741
SduI GDGCHC 2 cut(s) 101, 786
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 3 cut(s) 14, 133, 171
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 661
SmaI CCCGGG 1 cut(s) 654
SmiMI CAYNNNNRTG 3 cut(s) 66, 144, 618
SmlI CTYRAG 3 cut(s) 119, 128, 293
SmoI CTYRAG 3 cut(s) 119, 128, 293
Sse9I AATT 4 cut(s) 72, 283, 405, 637
SsiI CCGC 2 cut(s) 593, 710
SspMI CTAG 2 cut(s) 185, 665
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 5 cut(s) 276, 435, 651, 652, 739
StyI CCWWGG 2 cut(s) 510, 747
TaaI ACNGT 5 cut(s) 34, 197, 221, 325, 482
TaiI ACGT 2 cut(s) 566, 909
TaqI TCGA 3 cut(s) 329, 385, 856
TasI AATT 4 cut(s) 72, 283, 405, 637
TfiI GAWTC 1 cut(s) 696
TscAI CASTG 5 cut(s) 37, 315, 330, 421, 816
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 4 cut(s) 398, 602, 630, 789
TspMI CCCGGG 1 cut(s) 652
TspRI CASTG 5 cut(s) 37, 315, 330, 421, 816
Tth111I GACNNNGTC 1 cut(s) 721
VpaK11BI GGWCC 1 cut(s) 661
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 1 cut(s) 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmaI CCCGGG 1 cut(s) 652
XspI CTAG 2 cut(s) 185, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.