Rh2DG642400

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000309
Physical Location & Seq
Reverse (-)
86921799 .. 86922763
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG642400.1

Sequence Viewer

Length: 390 bp
ATGAAGTACCTTCAAAAGTTCGGTTATTTGAACTACGAGAACCATAGACATTCAGATGACGATGATTTCGACGAGCTCTTGGAGGAAGCCAGCCATCAAGATTTACCAGCTCAATTTCAACCTCAAGTCCACAGGAACATTGGACGACAAAACCATATCAACGATGATGATATGCCTCGTTGCACTGGCGGACTGAGCCGTTGTTTGCTTACTGCAATTATAGGATACATGAAGGTTGCGCCCCCACAGGTAGAAACCATTAGTGCAATTCATACCACTGTTCACTACTCATTTCCCGATGGAAATCTAAAATGGCCTTCTTCAAAATACCATCTGACTTACGGTTTTCTCGCTGGCACCCTATCAAAAGCCCCGGGCGCTGTCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

129

Amino Acids

14.57

Weight (kDa)

6.01

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AciI CCGC 1 cut(s) 189
AfaI GTAC 1 cut(s) 8
AgsI TTSAA 4 cut(s) 14, 31, 119, 324
AluBI AGCT 2 cut(s) 76, 110
AluI AGCT 2 cut(s) 76, 110
Alw21I GWGCWC 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 1 cut(s) 314
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 2 cut(s) 241, 380
AsuC2I CCSGG 2 cut(s) 374, 375
AvaI CYCGRG 1 cut(s) 373
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 3 cut(s) 102, 293, 339
BceAI ACGGC 1 cut(s) 183
BciVI GTATCC 1 cut(s) 218
BcnI CCSGG 2 cut(s) 374, 375
BfoI RGCGCY 1 cut(s) 381
BfuI GTATCC 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 374, 375
BmeT110I CYCGRG 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 2 cut(s) 374, 375
BpuEI CTTGAG 1 cut(s) 108
BpuMI CCSGG 2 cut(s) 374, 375
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 372, 373
Bse1I ACTGG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 372, 373
BseJI GATNNNNATC 1 cut(s) 303
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 190
BshFI GGCC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 1 cut(s) 374
BsnI GGCC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 78
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 356
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 372, 373
Bst4CI ACNGT 2 cut(s) 280, 344
BstC8I GCNNGC 2 cut(s) 91, 355
BstDEI CTNAG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 2 cut(s) 241, 380
BstMWI GCNNNNNNNGC 2 cut(s) 195, 377
BstSCI CCNGG 2 cut(s) 372, 373
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 183, 276
Cac8I GCNNGC 2 cut(s) 91, 355
CfoI GCGC 2 cut(s) 241, 380
Cfr9I CCCGGG 1 cut(s) 373
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 229
CviJI RGCY 7 cut(s) 76, 89, 93, 110, 198, 316, 371
CviKI_1 RGCY 7 cut(s) 76, 89, 93, 110, 198, 316, 371
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 194
EciI GGCGGA 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 1 cut(s) 232
FaiI YATR 7 cut(s) 45, 156, 173, 221, 230, 273, 388
FatI CATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 78
GlaI GCGC 2 cut(s) 240, 379
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 374
HhaI GCGC 2 cut(s) 241, 380
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 2 cut(s) 239, 378
HinP1I GCGC 2 cut(s) 239, 378
HpaII CCGG 1 cut(s) 374
Hpy166II GTNNAC 2 cut(s) 130, 283
Hpy188I TCNGA 2 cut(s) 55, 336
Hpy188III TCNNGA 2 cut(s) 98, 296
Hpy8I GTNNAC 2 cut(s) 130, 283
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 20, 226, 327
HpyCH4III ACNGT 2 cut(s) 280, 344
HpyCH4V TGCA 3 cut(s) 183, 215, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 377
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 2 cut(s) 239, 378
LpnPI CCDG 6 cut(s) 103, 118, 120, 171, 233, 339
MboII GAAGA 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 3 cut(s) 113, 216, 267
MnlI CCTC 3 cut(s) 76, 132, 186
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 2 cut(s) 374, 375
MwoI GCNNNNNNNGC 2 cut(s) 195, 377
NciI CCSGG 2 cut(s) 374, 375
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 358
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 54
SacI GAGCTC 1 cut(s) 78
ScrFI CCNGG 2 cut(s) 374, 375
SduI GDGCHC 1 cut(s) 78
SetI ASST 6 cut(s) 12, 78, 112, 124, 237, 252
SmaI CCCGGG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 3 cut(s) 113, 216, 267
SsiI CCGC 1 cut(s) 189
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 372, 373
TaaI ACNGT 2 cut(s) 280, 344
TaqI TCGA 1 cut(s) 69
TasI AATT 3 cut(s) 113, 216, 267
TscAI CASTG 2 cut(s) 190, 283
TspDTI ATGAA 3 cut(s) 17, 245, 260
TspMI CCCGGG 1 cut(s) 373
TspRI CASTG 2 cut(s) 190, 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmaI CCCGGG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.