Rmu_sc0012468.1_g000019

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012468.1
OG0000309
Physical Location & Seq
Reverse (-)
68080 .. 68520
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012468.1_g000019.1.cds

Sequence Viewer

Length: 441 bp
atggcaccaaaatctgatctttctcttttcacagtcactctccttcttctcctcctcgccctcttttctttcctctgtactgcaagggcaaactcatctccgtttgagttcctcgagcatcttaagggttgtcaaaaaggtgacaaggtcaagggcatcaacgacctcaagaagtaccttcaaaagttcggttacttaaactacgagaaccgcagacattccgatgacgatgattttgacgagctcttggaggaagccgtcaagacttaccagctcaatttccacctcaagtccaccagaacattggatgacaaaaccgtatcaacgatgatgatgcctcgatgtggtgtgcccggccgatatcatcaatggcaccacatccatgcgatcagcccagataaagcgccagcaccgtacgtatttcatcttactagaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

146

Amino Acids

16.92

Weight (kDa)

8.73

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 372
AciI CCGC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 355
AfaI GTAC 3 cut(s) 79, 176, 416
AfiI CCNNNNNNNGG 1 cut(s) 344
AflII CTTAAG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 2 cut(s) 244, 274
AluI AGCT 2 cut(s) 244, 274
Alw21I GWGCWC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 355
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspLEI GCGC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 354
BanI GGYRCC 2 cut(s) 4, 372
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BceAI ACGGC 1 cut(s) 242
BcgI CGANNNNNNTGC 2 cut(s) 316, 350
BcnI CCSGG 1 cut(s) 354
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 407
BfrI CTTAAG 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 6, 374
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 3 cut(s) 127, 165, 324
BpuEI CTTGAG 2 cut(s) 152, 272
BpuMI CCSGG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 418
Bsc4I CCNNNNNNNGG 1 cut(s) 344
BseGI GGATG 2 cut(s) 313, 378
BseLI CCNNNNNNNGG 1 cut(s) 344
BseRI GAGGAG 2 cut(s) 41, 44
BseSI GKGCMC 1 cut(s) 354
BseX3I CGGCCG 1 cut(s) 355
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 1 cut(s) 357
BshNI GGYRCC 2 cut(s) 4, 372
BsiEI CGRYCG 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 354
BsiWI CGTACG 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 344
BsnI GGCC 1 cut(s) 357
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 246, 354
Bsp143I GATC 2 cut(s) 16, 387
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 6, 374
BspT107I GGYRCC 2 cut(s) 4, 372
BspTI CTTAAG 1 cut(s) 122
BssMI GATC 2 cut(s) 16, 387
Bst4CI ACNGT 3 cut(s) 34, 319, 414
BstAFI CTTAAG 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 408
BstF5I GGATG 2 cut(s) 313, 378
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 2 cut(s) 19, 390
BstMBI GATC 2 cut(s) 16, 387
BstMCI CGRYCG 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 354
BstSNI TACGTA 1 cut(s) 418
BstXI CCANNNNNNTGG 1 cut(s) 304
BstZI CGGCCG 1 cut(s) 355
BsuRI GGCC 1 cut(s) 357
BtsCI GGATG 2 cut(s) 313, 378
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 406
Csp6I GTAC 3 cut(s) 78, 175, 415
CviAII CATG 1 cut(s) 383
CviJI RGCY 5 cut(s) 244, 257, 274, 357, 393
CviKI_1 RGCY 5 cut(s) 244, 257, 274, 357, 393
CviQI GTAC 3 cut(s) 78, 175, 415
DpnI GATC 2 cut(s) 18, 389
DpnII GATC 2 cut(s) 16, 387
EaeI YGGCCR 1 cut(s) 355
EagI CGGCCG 1 cut(s) 355
Ecl136II GAGCTC 1 cut(s) 244
EclXI CGGCCG 1 cut(s) 355
Eco105I TACGTA 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 246
Eco32I GATATC 1 cut(s) 362
Eco52I CGGCCG 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 244
EcoRV GATATC 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 1 cut(s) 386
FaiI YATR 1 cut(s) 384
FatI CATG 1 cut(s) 382
FokI GGATG 2 cut(s) 320, 365
FriOI GRGCYC 1 cut(s) 246
FspBI CTAG 1 cut(s) 432
GlaI GCGC 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 1 cut(s) 357
HapII CCGG 1 cut(s) 354
HhaI GCGC 1 cut(s) 406
Hin1II CATG 1 cut(s) 386
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HpaII CCGG 1 cut(s) 354
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 2 cut(s) 16, 223
Hpy188III TCNNGA 2 cut(s) 169, 262
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 2 cut(s) 53, 188
HpyCH4III ACNGT 3 cut(s) 34, 319, 414
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 1 cut(s) 386
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 2 cut(s) 16, 387
LpnPI CCDG 5 cut(s) 284, 310, 367, 408, 420
LweI GCATC 3 cut(s) 127, 165, 324
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 3 cut(s) 34, 140, 191
MalI GATC 2 cut(s) 18, 389
MboI GATC 2 cut(s) 16, 387
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 246, 354
MluCI AATT 1 cut(s) 277
MnlI CCTC 9 cut(s) 62, 65, 71, 83, 122, 176, 244, 296, 348
MseI TTAA 2 cut(s) 123, 197
MslI CAYNNNNRTG 2 cut(s) 222, 381
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 354
NciI CCSGG 1 cut(s) 354
NdeII GATC 2 cut(s) 16, 387
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 2 cut(s) 6, 374
NmuCI GTSAC 2 cut(s) 34, 140
PaeR7I CTCGAG 1 cut(s) 113
Pfl23II CGTACG 1 cut(s) 414
PflFI GACNNNGTC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 246
PspLI CGTACG 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 6, 374
PspXI VCTCGAGB 1 cut(s) 113
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 3 cut(s) 79, 176, 416
RsaNI GTAC 3 cut(s) 78, 175, 415
RseI CAYNNNNRTG 2 cut(s) 222, 381
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 123, 197
Sau3AI GATC 2 cut(s) 16, 387
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 246, 354
SetI ASST 8 cut(s) 142, 150, 168, 180, 246, 276, 288, 420
SfaNI GCATC 3 cut(s) 127, 165, 324
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 222, 381
SmlI CTYRAG 4 cut(s) 113, 122, 167, 287
SmoI CTYRAG 4 cut(s) 113, 122, 167, 287
SnaBI TACGTA 1 cut(s) 418
Sse9I AATT 1 cut(s) 277
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 432
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 3 cut(s) 34, 319, 414
TaiI ACGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 114, 340
TasI AATT 1 cut(s) 277
TatI WGTACW 1 cut(s) 77
Tru1I TTAA 2 cut(s) 123, 197
Tru9I TTAA 2 cut(s) 123, 197
TseFI GTSAC 2 cut(s) 34, 140
Tsp45I GTSAC 2 cut(s) 34, 140
TspDTI ATGAA 1 cut(s) 413
TspGWI ACGGA 1 cut(s) 90
Tth111I GACNNNGTC 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XhoI CTCGAG 1 cut(s) 113
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.