Rh7AG354700

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000309
Physical Location & Seq
Forward (+)
45396572 .. 45396841
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG354700.1

Sequence Viewer

Length: 270 bp
ATGGCATCAAAATCTGATCTCTCTCTTTTCACAGTCACTCTCCTCCTCCTCCTCGCCCTCTTTTCTTTCCTATCTAATGCAACGGCAAACTCATCTCCGTTTGAGTTCCTTGAGCAGCTTAAGGGTTGTCACAAAAGTGACAAGGTCAAGGGCGTCAATGACCTCAAGAAGTACCTTCAAAAGTTCGGTTACTTAAACTATGAGAACCACAGACATTCTGATGACAATGATTTTGACGAGCTCTTGGAGGAAGCCATCAAGACGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

89

Amino Acids

10.21

Weight (kDa)

5.49

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 173, 266
AflII CTTAAG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 179
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 2 cut(s) 118, 241
AluI AGCT 2 cut(s) 118, 241
Alw21I GWGCWC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 99
BfaI CTAG 1 cut(s) 268
BfrI CTTAAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmsI GCATC 1 cut(s) 14
BpuEI CTTGAG 2 cut(s) 131, 149
BsaHI GRCGYC 1 cut(s) 153
BseRI GAGGAG 4 cut(s) 32, 35, 38, 41
BseXI GCAGC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 119
BssMI GATC 1 cut(s) 16
BssNI GRCGYC 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 119
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 127
CseI GACGC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 172, 265
CviJI RGCY 3 cut(s) 118, 241, 254
CviKI_1 RGCY 3 cut(s) 118, 241, 254
CviQI GTAC 2 cut(s) 172, 265
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 243
FaiI YATR 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 268
GluI GCNGC 1 cut(s) 116
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 153
Hpy188I TCNGA 2 cut(s) 16, 220
Hpy188III TCNNGA 2 cut(s) 166, 259
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 263
Hsp92I GRCGYC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 268
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 4 cut(s) 34, 128, 137, 188
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 243
MnlI CCTC 7 cut(s) 53, 56, 59, 62, 68, 173, 241
MseI TTAA 2 cut(s) 120, 194
MslI CAYNNNNRTG 2 cut(s) 135, 219
MspCI CTTAAG 1 cut(s) 119
NdeII GATC 1 cut(s) 16
NmuCI GTSAC 3 cut(s) 34, 128, 137
OliI CACNNNNGTG 1 cut(s) 135
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 243
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 2 cut(s) 173, 266
RsaNI GTAC 2 cut(s) 172, 265
RseI CAYNNNNRTG 2 cut(s) 135, 219
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 120, 194
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 243
SetI ASST 6 cut(s) 120, 147, 165, 177, 243, 266
SfaNI GCATC 1 cut(s) 14
SgeI CNNG 7 cut(s) 65, 122, 154, 160, 178, 250, 256
SmiMI CAYNNNNRTG 2 cut(s) 135, 219
SmlI CTYRAG 3 cut(s) 110, 119, 164
SmoI CTYRAG 3 cut(s) 110, 119, 164
SspMI CTAG 1 cut(s) 268
SstI GAGCTC 1 cut(s) 243
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 266
Tru1I TTAA 2 cut(s) 120, 194
Tru9I TTAA 2 cut(s) 120, 194
TseFI GTSAC 3 cut(s) 34, 128, 137
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 3 cut(s) 34, 128, 137
TspGWI ACGGA 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 119
XspI CTAG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.