Rorug04G0022500

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000309
Physical Location & Seq
Forward (+)
3203299 .. 3203912
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0022500.1

Sequence Viewer

Length: 441 bp
ATGATGGTCTTTTGGGCAATGATAGAGGGCCTCAATGGTCTTTTGGGTTTGTTGAAAATGGGACAGAAGCTGCCACAAGCAACTGTTGTTGCCATTGACTCTTTTGAAACAAACTTTGGAAGTCTGGTGGCACTGCCCAACGTGGAGGTGGGAGCATTAGCTGAGGCGTTAGAGGAAGGTGGATCATTTAGGGGAAATCAAGAGGACATTCCACAAGGATTTATTGAAAGAAGAATCAGGTTATCCATAGGAAAAGTAGTTCCATGGTTGAACCAAGATCAAATCCTCGGTCATACCTCAGTTGGAGTGCATGTAATACATTGTGGTTGGAACTCAATTTTGGAGAATGTAACTTCTGGTGTTCCTATGATTGGGAGGCCTATATTTGCTGATCAACACATAAATATGCGGAACGTAGAAGTTGATCGGTGTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

146

Amino Acids

16.02

Weight (kDa)

4.99

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 85 - 140 1e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 409
AclWI GGATC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 4 cut(s) 55, 107, 227, 271
AjuI GAANNNNNNNTTGG 4 cut(s) 99, 131, 323, 355
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 2 cut(s) 70, 161
AluI AGCT 2 cut(s) 70, 161
AlwI GGATC 1 cut(s) 190
AlwNI CAGNNNCTG 1 cut(s) 70
AoxI GGCC 2 cut(s) 28, 377
ApeKI GCWGC 1 cut(s) 70
ArsI GACNNNNNNTTYG 2 cut(s) 274, 306
AspS9I GGNCC 1 cut(s) 28
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 57
BclI TGATCA 1 cut(s) 391
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 263, 286
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 263, 286
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 153, 312
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 2 cut(s) 30, 379
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 2 cut(s) 30, 379
Bsp143I GATC 4 cut(s) 182, 277, 391, 424
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 1 cut(s) 409
BspANI GGCC 2 cut(s) 30, 379
BspCNI CTCAG 2 cut(s) 154, 311
BspPI GGATC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 263, 286
BssMI GATC 4 cut(s) 182, 277, 391, 424
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 162, 298
BstDSI CCRYGG 1 cut(s) 263
BstKTI GATC 4 cut(s) 185, 280, 394, 427
BstMBI GATC 4 cut(s) 182, 277, 391, 424
BstNSI RCATGY 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 30, 379
BtgI CCRYGG 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 131
CaiI CAGNNNCTG 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 28
CviAII CATG 2 cut(s) 264, 311
CviJI RGCY 4 cut(s) 30, 70, 161, 379
CviKI_1 RGCY 4 cut(s) 30, 70, 161, 379
DdeI CTNAG 2 cut(s) 162, 298
DpnI GATC 4 cut(s) 184, 279, 393, 426
DpnII GATC 4 cut(s) 182, 277, 391, 424
Eco130I CCWWGG 1 cut(s) 263
Eco147I AGGCCT 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 2 cut(s) 267, 314
FaiI YATR 8 cut(s) 248, 265, 294, 312, 368, 383, 401, 407
FaqI GGGAC 1 cut(s) 75
FatI CATG 2 cut(s) 263, 310
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 2 cut(s) 30, 379
Hin1II CATG 2 cut(s) 267, 314
HinfI GANTC 2 cut(s) 98, 234
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 141, 414
HpyCH4V TGCA 1 cut(s) 310
HpyF3I CTNAG 2 cut(s) 162, 298
HpySE526I ACGT 2 cut(s) 141, 414
Hsp92II CATG 2 cut(s) 267, 314
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 4 cut(s) 182, 277, 391, 424
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 110, 223, 342
Lsp1109I GCAGC 1 cut(s) 57
MaeII ACGT 2 cut(s) 141, 414
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 184, 279, 393, 426
MboI GATC 4 cut(s) 182, 277, 391, 424
MboII GAAGA 1 cut(s) 243
MluCI AATT 1 cut(s) 336
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 283, 308
MslI CAYNNNNRTG 1 cut(s) 404
NcoI CCATGG 1 cut(s) 263
NdeII GATC 4 cut(s) 182, 277, 391, 424
NlaIII CATG 2 cut(s) 267, 314
NspI RCATGY 1 cut(s) 314
PceI AGGCCT 1 cut(s) 379
PfeI GAWTC 1 cut(s) 234
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 404
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 4 cut(s) 182, 277, 391, 424
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 92
SetI ASST 8 cut(s) 72, 144, 150, 163, 181, 242, 299, 417
SmiMI CAYNNNNRTG 1 cut(s) 404
Sse9I AATT 1 cut(s) 336
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 1 cut(s) 409
StuI AGGCCT 1 cut(s) 379
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 144, 417
TaqII GACCGA 1 cut(s) 278
TasI AATT 1 cut(s) 336
TfiI GAWTC 1 cut(s) 234
TscAI CASTG 1 cut(s) 138
TseI GCWGC 1 cut(s) 70
TspRI CASTG 1 cut(s) 138
XceI RCATGY 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.