RchiOBHm_Chr2g0170151

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000309
Physical Location & Seq
Reverse (-)
84147472 .. 84148921
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53771

Sequence Viewer

Length: 915 bp
ATGGCACCAAAATCTGATATTTCTCTTTTCAAAGTGACTCTCCTCCTCCTCCTCGCCCTCTTTTCTTTCCTCTCTAATGCAACGGCAAACTCATCTCCGTTTGAGTTCCTTGAGCATCTTAAGGGCTGTCAACAAGGTGACAAGGTCAAGGGCATCAATGACCTCAAGAAGTACCTTCACAACTTCGGTTACTTGAACTACAAGAACTACATTCATTCTGATGACGATGATTTCGACGAGCTCTTGGAGGAAGCCGTCAAGACTTACCAGCTCAACTTCCACCTCAAGTCCACCGGAACGTTGGACGACAAAACCATATCACAGATGATGATGCCTCGTTGTGGTGTGCCCGATATCGTCAATGGCACCACATCCATGCGATCAACCCAGAAGCACCGGCACGGTTCAATTCATACCACTGTTCACTACTCATTTCCTAATGGAAAACCAAAATGGCCTTCCTCTAAATACCATCTGTCATACGCTTTCTTCCCCGGCACCCCATCCCAAGCCACGGGTGCTATCGCACAGGCTTTCGCAACATGGGCTAGAAGCACTCACTTCAAGTTCAGTCAGGCCCAAAATTACCAGAATGCAGATGTCAAGATTAGTTTTCACCGAGGTAATCATGGAGACGGGCGTAATTTTGATGGGCCAGGCGGAGTGCTGGCCCATGCTTTTTACCCTACGGATGGAAGATTCCACTTCGACGCAGCTGAGAATTGGTCTGTGGGTGCTAAGCCAGGTGCCTATGACTTGGAGAGTGTTGCTTTGCACGAAATAGGGCACCTTCTGGGACTTGGACATAGCTCAGTGAAGGGAGCTATCATGTCAGCAACCATCTCCCCGGGAGTGACTCTTAAAAGTTTGCATGGGGACGATATTCAAGGAATAAAAGCTTTATACAACGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

304

Amino Acids

33.53

Weight (kDa)

7.85

Isoelectric Point (pI)

20.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 52 - 109 1.6e-10 Putative peptidoglycan binding domain
Peptidase_M10 PF00413 152 - 302 7.8e-47 Matrixin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 4, 365, 497, 746, 786
AciI CCGC 1 cut(s) 660
AclI AACGTT 2 cut(s) 299, 909
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 3 cut(s) 341, 514, 692
AflII CTTAAG 1 cut(s) 119
AgsI TTSAA 5 cut(s) 31, 196, 408, 565, 887
AjnI CCWGG 2 cut(s) 655, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AluBI AGCT 6 cut(s) 241, 271, 716, 810, 824, 899
AluI AGCT 6 cut(s) 241, 271, 716, 810, 824, 899
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 627
Ama87I CYCGRG 1 cut(s) 847
AoxI GGCC 4 cut(s) 455, 576, 653, 669
ApeKI GCWGC 1 cut(s) 713
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspS9I GGNCC 3 cut(s) 577, 653, 670
AsuC2I CCSGG 3 cut(s) 495, 848, 849
AsuHPI GGTGA 2 cut(s) 149, 608
AvaI CYCGRG 1 cut(s) 847
BaeGI GKGCMC 2 cut(s) 351, 789
BanI GGYRCC 5 cut(s) 4, 365, 497, 746, 786
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 725
BccI CCATC 5 cut(s) 480, 511, 644, 686, 848
BceAI ACGGC 2 cut(s) 99, 239
BciT130I CCWGG 2 cut(s) 657, 744
BcnI CCSGG 3 cut(s) 495, 848, 849
BcoDI GTCTC 1 cut(s) 627
BfaI CTAG 1 cut(s) 549
BfrI CTTAAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 714
BlpI GCTNAGC 1 cut(s) 738
BlsI GCNGC 1 cut(s) 715
Bme1390I CCNGG 5 cut(s) 495, 657, 744, 848, 849
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 3 cut(s) 577, 653, 670
BmiI GGNNCC 5 cut(s) 6, 367, 499, 748, 788
BmrFI CCNGG 5 cut(s) 495, 657, 744, 848, 849
BmsI GCATC 3 cut(s) 124, 162, 321
Bpu1102I GCTNAGC 1 cut(s) 738
BpuEI CTTGAG 3 cut(s) 131, 149, 269
BpuMI CCSGG 3 cut(s) 495, 848, 849
BsaJI CCNNGG 5 cut(s) 493, 513, 619, 846, 847
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 514, 692
Bse118I RCCGGY 1 cut(s) 396
BseBI CCWGG 2 cut(s) 657, 744
BseDI CCNNGG 5 cut(s) 493, 513, 619, 846, 847
BseGI GGATG 3 cut(s) 371, 503, 697
BseLI CCNNNNNNNGG 3 cut(s) 341, 514, 692
BseMII CTCAG 2 cut(s) 708, 825
BseRI GAGGAG 4 cut(s) 32, 35, 38, 41
BseSI GKGCMC 2 cut(s) 351, 789
BseXI GCAGC 1 cut(s) 725
BshFI GGCC 4 cut(s) 457, 578, 655, 671
BshNI GGYRCC 5 cut(s) 4, 365, 497, 746, 786
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 847
BsiSI CCGG 4 cut(s) 294, 397, 495, 848
BslFI GGGAC 2 cut(s) 810, 890
BslI CCNNNNNNNGG 3 cut(s) 341, 514, 692
BsmAI GTCTC 1 cut(s) 627
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 2 cut(s) 810, 890
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 4 cut(s) 457, 578, 655, 671
BsoBI CYCGRG 1 cut(s) 847
Bsp1286I GDGCHC 3 cut(s) 243, 351, 789
Bsp143I GATC 1 cut(s) 380
Bsp1720I GCTNAGC 1 cut(s) 738
BspACI CCGC 1 cut(s) 660
BspANI GGCC 4 cut(s) 457, 578, 655, 671
BspCNI CTCAG 2 cut(s) 709, 824
BspLI GGNNCC 5 cut(s) 6, 367, 499, 748, 788
BspT107I GGYRCC 5 cut(s) 4, 365, 497, 746, 786
BspTI CTTAAG 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 396
BssECI CCNNGG 5 cut(s) 493, 513, 619, 846, 847
BssMI GATC 1 cut(s) 380
Bst2UI CCWGG 2 cut(s) 657, 744
Bst4CI ACNGT 2 cut(s) 404, 421
BstAFI CTTAAG 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 3 cut(s) 717, 738, 811
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 3 cut(s) 371, 503, 697
BstKTI GATC 1 cut(s) 383
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 1 cut(s) 380
BstMWI GCNNNNNNNGC 2 cut(s) 518, 545
BstNI CCWGG 2 cut(s) 657, 744
BstSCI CCNGG 5 cut(s) 493, 655, 742, 846, 847
BstSLI GKGCMC 2 cut(s) 351, 789
BstV1I GCAGC 1 cut(s) 725
BsuRI GGCC 4 cut(s) 457, 578, 655, 671
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 3 cut(s) 371, 503, 697
BtsIMutI CAGTG 2 cut(s) 417, 819
Cac8I GCNNGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 396
Cfr13I GGNCC 3 cut(s) 577, 653, 670
Cfr9I CCCGGG 1 cut(s) 847
CseI GACGC 1 cut(s) 719
Csp6I GTAC 1 cut(s) 172
CviAII CATG 6 cut(s) 376, 543, 629, 674, 829, 872
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 3 cut(s) 717, 738, 811
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
EciI GGCGGA 1 cut(s) 675
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 847
EcoICRI GAGCTC 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 655, 742
EcoRV GATATC 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 627
FaeI CATG 6 cut(s) 379, 546, 632, 677, 832, 875
FaqI GGGAC 2 cut(s) 810, 890
FatI CATG 6 cut(s) 375, 542, 628, 673, 828, 871
Fnu4HI GCNGC 1 cut(s) 714
FokI GGATG 3 cut(s) 358, 490, 704
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 714
FspBI CTAG 1 cut(s) 549
GluI GCNGC 1 cut(s) 714
HaeIII GGCC 4 cut(s) 457, 578, 655, 671
HapII CCGG 4 cut(s) 294, 397, 495, 848
HgaI GACGC 1 cut(s) 719
Hin1II CATG 6 cut(s) 379, 546, 632, 677, 832, 875
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 3 cut(s) 37, 699, 856
HpaII CCGG 4 cut(s) 294, 397, 495, 848
HphI GGTGA 2 cut(s) 149, 608
Hpy166II GTNNAC 3 cut(s) 131, 291, 424
Hpy188I TCNGA 2 cut(s) 16, 220
Hpy188III TCNNGA 3 cut(s) 166, 259, 604
Hpy8I GTNNAC 3 cut(s) 131, 291, 424
Hpy99I CGWCG 2 cut(s) 239, 713
HpyAV CCTTC 4 cut(s) 185, 468, 800, 811
HpyCH4III ACNGT 2 cut(s) 404, 421
HpyCH4IV ACGT 2 cut(s) 299, 909
HpyCH4V TGCA 4 cut(s) 80, 596, 775, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 545
HpyF3I CTNAG 3 cut(s) 717, 738, 811
HpySE526I ACGT 2 cut(s) 299, 909
Hsp92II CATG 6 cut(s) 379, 546, 632, 677, 832, 875
Kzo9I GATC 1 cut(s) 380
LmnI GCTCC 1 cut(s) 821
Lsp1109I GCAGC 1 cut(s) 725
LweI GCATC 3 cut(s) 124, 162, 321
MaeI CTAG 1 cut(s) 549
MaeII ACGT 2 cut(s) 299, 909
MaeIII GTNAC 4 cut(s) 34, 137, 188, 853
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 2 cut(s) 481, 708
MhlI GDGCHC 3 cut(s) 243, 351, 789
MluCI AATT 4 cut(s) 408, 583, 643, 721
MlyI GAGTC 2 cut(s) 31, 850
MmeI TCCRAC 1 cut(s) 282
MseI TTAA 2 cut(s) 120, 861
MslI CAYNNNNRTG 2 cut(s) 219, 374
MspA1I CMGCKG 1 cut(s) 716
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 4 cut(s) 294, 397, 495, 848
MspR9I CCNGG 5 cut(s) 495, 657, 744, 848, 849
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 2 cut(s) 657, 744
MwoI GCNNNNNNNGC 2 cut(s) 518, 545
NciI CCSGG 3 cut(s) 495, 848, 849
NdeII GATC 1 cut(s) 380
NlaIII CATG 6 cut(s) 379, 546, 632, 677, 832, 875
NlaIV GGNNCC 5 cut(s) 6, 367, 499, 748, 788
NmuCI GTSAC 3 cut(s) 34, 137, 853
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 1 cut(s) 699
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 715
PleI GAGTC 2 cut(s) 31, 850
PpsI GAGTC 2 cut(s) 31, 850
Psp124BI GAGCTC 1 cut(s) 243
Psp1406I AACGTT 2 cut(s) 299, 909
Psp6I CCWGG 2 cut(s) 655, 742
PspGI CCWGG 2 cut(s) 655, 742
PspN4I GGNNCC 5 cut(s) 6, 367, 499, 748, 788
PspPI GGNCC 3 cut(s) 577, 653, 670
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 2 cut(s) 219, 374
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 120, 861
SatI GCNGC 1 cut(s) 714
Sau3AI GATC 1 cut(s) 380
Sau96I GGNCC 3 cut(s) 577, 653, 670
SchI GAGTC 2 cut(s) 31, 850
ScrFI CCNGG 5 cut(s) 495, 657, 744, 848, 849
SduI GDGCHC 3 cut(s) 243, 351, 789
SfaNI GCATC 3 cut(s) 124, 162, 321
SmaI CCCGGG 1 cut(s) 849
SmiMI CAYNNNNRTG 2 cut(s) 219, 374
SmlI CTYRAG 4 cut(s) 110, 119, 164, 284
SmoI CTYRAG 4 cut(s) 110, 119, 164, 284
Sse9I AATT 4 cut(s) 408, 583, 643, 721
SsiI CCGC 1 cut(s) 660
SspMI CTAG 1 cut(s) 549
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 5 cut(s) 493, 655, 742, 846, 847
TaaI ACNGT 2 cut(s) 404, 421
TaiI ACGT 2 cut(s) 302, 912
TaqI TCGA 2 cut(s) 234, 708
TasI AATT 4 cut(s) 408, 583, 643, 721
TfiI GAWTC 1 cut(s) 699
Tru1I TTAA 2 cut(s) 120, 861
Tru9I TTAA 2 cut(s) 120, 861
TscAI CASTG 2 cut(s) 424, 819
TseFI GTSAC 3 cut(s) 34, 137, 853
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 3 cut(s) 34, 137, 853
TspDTI ATGAA 2 cut(s) 203, 401
TspGWI ACGGA 2 cut(s) 87, 704
TspMI CCCGGG 1 cut(s) 847
TspRI CASTG 2 cut(s) 424, 819
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmaI CCCGGG 1 cut(s) 847
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.