Rh2AG631500

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000309
Physical Location & Seq
Reverse (-)
85777424 .. 85785263
7840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG631500.1

Sequence Viewer

Length: 405 bp
ATGGCACCAAAATCTGATCTTTCTCTTTTCACAGTCACTCTCCTCCTCCTCCTCGCCCTCTTTTCTTTCCTCTCTAATGCAATGGCAAACTCATCTCCGTTTCAGTTCCTTGAGCATCTTAAGGGTTGTCACAAAGGTGACAAGGTCAAGGGCATCAATGACCTCAAGAATTACCTTCACAACTTCGGTTACTTGAACTACAAGAACCACATCCATTCTGATGACGATGATTTCGACGAGCTCTTGGAGGAAGCCGTCAAGACTTACCAGCTCAATGTCCACCTCAAGTCCACCGGAACGTTGGACGACAAAACCATATCACAGATGATGATGCCTCGTTGTGGTGTGCCCGATATCATCAATGGCACCACATATGTTCCTAGTTTTACCTGCTGTGAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

134

Amino Acids

15.09

Weight (kDa)

5.56

Isoelectric Point (pI)

26.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 52 - 109 6.8e-10 Putative peptidoglycan binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 398
AccB1I GGYRCC 2 cut(s) 4, 365
AclI AACGTT 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 341
AflII CTTAAG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 196
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 2 cut(s) 241, 271
AluI AGCT 2 cut(s) 241, 271
Alw21I GWGCWC 1 cut(s) 243
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AsuHPI GGTGA 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 2 cut(s) 4, 365
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BceAI ACGGC 1 cut(s) 239
BfaI CTAG 1 cut(s) 381
BfrI CTTAAG 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 6, 367
BmsI GCATC 3 cut(s) 124, 162, 321
BpuEI CTTGAG 3 cut(s) 131, 149, 269
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 87
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 1 cut(s) 87
BseRI GAGGAG 4 cut(s) 32, 35, 38, 41
BseSI GKGCMC 1 cut(s) 351
BshNI GGYRCC 2 cut(s) 4, 365
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 243, 351
Bsp143I GATC 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 6, 367
BspMI ACCTGC 1 cut(s) 398
BspT107I GGYRCC 2 cut(s) 4, 365
BspTI CTTAAG 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 87
BssMI GATC 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 34
BstAFI CTTAAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 351
BtsCI GGATG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 398
CviJI RGCY 3 cut(s) 241, 254, 271
CviKI_1 RGCY 3 cut(s) 241, 254, 271
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 243
FaiI YATR 3 cut(s) 317, 373, 375
FauNDI CATATG 1 cut(s) 373
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 243
FspBI CTAG 1 cut(s) 381
HapII CCGG 1 cut(s) 294
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 280, 291
Hpy188I TCNGA 2 cut(s) 16, 220
Hpy188III TCNNGA 2 cut(s) 166, 259
Hpy8I GTNNAC 2 cut(s) 280, 291
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 299
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 281, 307
LweI GCATC 3 cut(s) 124, 162, 321
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 4 cut(s) 34, 128, 137, 188
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 243, 351
MluCI AATT 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 282
MseI TTAA 2 cut(s) 120, 403
MslI CAYNNNNRTG 2 cut(s) 135, 219
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 1 cut(s) 294
NdeI CATATG 1 cut(s) 373
NdeII GATC 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 6, 367
NmuCI GTSAC 3 cut(s) 34, 128, 137
OliI CACNNNNGTG 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PflFI GACNNNGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 6, 367
PsyI GACNNNGTC 1 cut(s) 143
RseI CAYNNNNRTG 2 cut(s) 135, 219
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 120, 403
Sau3AI GATC 1 cut(s) 16
SduI GDGCHC 2 cut(s) 243, 351
SfaNI GCATC 3 cut(s) 124, 162, 321
SmiMI CAYNNNNRTG 2 cut(s) 135, 219
SmlI CTYRAG 4 cut(s) 110, 119, 164, 284
SmoI CTYRAG 4 cut(s) 110, 119, 164, 284
Sse9I AATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 243
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 234
TasI AATT 1 cut(s) 169
Tru1I TTAA 2 cut(s) 120, 403
Tru9I TTAA 2 cut(s) 120, 403
TseFI GTSAC 3 cut(s) 34, 128, 137
Tsp45I GTSAC 3 cut(s) 34, 128, 137
TspGWI ACGGA 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.