RLG00000021938

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000309
Physical Location & Seq
Reverse (-)
79419318 .. 79420248
931 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021938

Sequence Viewer

Length: 600 bp
ATGTCAAAGATGATGATGCCTCGTTGTGGCGTGCCGGATTTCATCAATGGCACCTCGTCCATGCGATCAGCCAAGAAAAGGCACCACCATGTTTCAATTCATACCACTGCTCACTACTCATTTTTCCAGGGAAATCCAAAATGGTCTTCTTCTAAATACCATCTCACTTACGGTTTTCTCCCCAACACCCCATCCGAAGCCACGGGTGCTGTCGCACGGGCTTTTGCAACATGGGCTGGAAACACTCACTTCACGTTCAGCCAGTCCCAAAGTTACGAGAATGCGGATTTGAAGATTAGTTTTCATAAGGGTGATCATGGAGACGGGAATTCATTTGATGGCCCGGGCGGGGTCCTAGCCCATGCTTTTAGCCCGTCAGATGGAAGATTCCACTACGACGCAGTTGAGCCTTGGTTTGTGGGTGCTACACCAGGTGCTTATGACTTGGAGACTGTGGCTTTGCATGAAATAGGGCACCTTCTGGGACTTGGACATAGCTCAGTGGAGGGAGCTATCATGGCCCCAGCTATTCCCCCGGGAGTGACTAAAAGTTTGCATGGGGACGATGTTCAAGGAATCAAGGCTTTATACAACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

200

Amino Acids

21.46

Weight (kDa)

6.72

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M10 PF00413 47 - 197 2.8e-45 Matrixin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 50, 81, 474
AciI CCGC 2 cut(s) 284, 348
AcsI RAATTY 1 cut(s) 328
AdeI CACNNNGTG 1 cut(s) 434
AfiI CCNNNNNNNGG 4 cut(s) 26, 78, 349, 380
AgsI TTSAA 3 cut(s) 96, 292, 572
AjnI CCWGG 2 cut(s) 126, 430
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 3 cut(s) 498, 512, 527
AluI AGCT 3 cut(s) 498, 512, 527
Alw26I GTCTC 2 cut(s) 315, 443
Ama87I CYCGRG 2 cut(s) 343, 535
AoxI GGCC 2 cut(s) 340, 519
ApoI RAATTY 1 cut(s) 328
ArsI GACNNNNNNTTYG 4 cut(s) 442, 474, 535, 567
AspS9I GGNCC 3 cut(s) 341, 352, 520
AsuC2I CCSGG 4 cut(s) 344, 345, 536, 537
AsuHPI GGTGA 1 cut(s) 323
AvaI CYCGRG 2 cut(s) 343, 535
AvaII GGWCC 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 477
BanI GGYRCC 3 cut(s) 50, 81, 474
BbsI GAAGAC 1 cut(s) 138
BccI CCATC 4 cut(s) 168, 199, 332, 374
BciT130I CCWGG 2 cut(s) 128, 432
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 4 cut(s) 344, 345, 536, 537
BcoDI GTCTC 2 cut(s) 315, 443
BfaI CTAG 1 cut(s) 356
Bme1390I CCNGG 6 cut(s) 128, 344, 345, 432, 536, 537
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 2 cut(s) 343, 535
BmgT120I GGNCC 3 cut(s) 341, 352, 520
BmiI GGNNCC 5 cut(s) 52, 83, 353, 476, 522
BmrFI CCNGG 6 cut(s) 128, 344, 345, 432, 536, 537
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 138
BpuMI CCSGG 4 cut(s) 344, 345, 536, 537
BsaJI CCNNGG 6 cut(s) 127, 201, 343, 410, 534, 535
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 78, 349, 380
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 2 cut(s) 128, 432
BseDI CCNNGG 6 cut(s) 127, 201, 343, 410, 534, 535
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 4 cut(s) 26, 78, 349, 380
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 477
BseYI CCCAGC 1 cut(s) 523
BshFI GGCC 2 cut(s) 342, 521
BshNI GGYRCC 3 cut(s) 50, 81, 474
BsiHKCI CYCGRG 2 cut(s) 343, 535
BsiSI CCGG 3 cut(s) 35, 344, 536
BslFI GGGAC 3 cut(s) 250, 498, 575
BslI CCNNNNNNNGG 4 cut(s) 26, 78, 349, 380
BsmAI GTCTC 2 cut(s) 315, 443
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 3 cut(s) 250, 498, 575
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 2 cut(s) 342, 521
BsoBI CYCGRG 2 cut(s) 343, 535
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 2 cut(s) 65, 313
BspACI CCGC 2 cut(s) 284, 348
BspANI GGCC 2 cut(s) 342, 521
BspCNI CTCAG 1 cut(s) 512
BspLI GGNNCC 5 cut(s) 52, 83, 353, 476, 522
BspT107I GGYRCC 3 cut(s) 50, 81, 474
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 6 cut(s) 127, 201, 343, 410, 534, 535
BssMI GATC 2 cut(s) 65, 313
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 2 cut(s) 128, 432
Bst4CI ACNGT 2 cut(s) 173, 454
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 499
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 2 cut(s) 68, 316
BstMAI GTCTC 2 cut(s) 315, 443
BstMBI GATC 2 cut(s) 65, 313
BstMWI GCNNNNNNNGC 3 cut(s) 206, 233, 518
BstNI CCWGG 2 cut(s) 128, 432
BstSCI CCNGG 6 cut(s) 126, 342, 343, 430, 534, 535
BstSLI GKGCMC 1 cut(s) 477
BstV2I GAAGAC 1 cut(s) 138
BsuRI GGCC 2 cut(s) 342, 521
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 507
Cac8I GCNNGC 1 cut(s) 32
Cfr13I GGNCC 3 cut(s) 341, 352, 520
Cfr9I CCCGGG 2 cut(s) 343, 535
CseI GACGC 1 cut(s) 407
CsiI ACCWGGT 1 cut(s) 430
CviAII CATG 8 cut(s) 61, 89, 231, 317, 362, 464, 517, 557
DdeI CTNAG 1 cut(s) 499
DpnI GATC 2 cut(s) 67, 315
DpnII GATC 2 cut(s) 65, 313
DraIII CACNNNGTG 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 352
Eco88I CYCGRG 2 cut(s) 343, 535
EcoO109I RGGNCCY 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 126, 430
EcoT14I CCWWGG 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 410
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 8 cut(s) 64, 92, 234, 320, 365, 467, 520, 560
FaqI GGGAC 3 cut(s) 250, 498, 575
FatI CATG 8 cut(s) 60, 88, 230, 316, 361, 463, 516, 556
FauI CCCGC 1 cut(s) 341
FbaI TGATCA 1 cut(s) 313
FokI GGATG 1 cut(s) 178
FspBI CTAG 1 cut(s) 356
GsaI CCCAGC 1 cut(s) 527
HaeIII GGCC 2 cut(s) 342, 521
HapII CCGG 3 cut(s) 35, 344, 536
HgaI GACGC 1 cut(s) 407
Hin1II CATG 8 cut(s) 64, 92, 234, 320, 365, 467, 520, 560
HinfI GANTC 2 cut(s) 387, 576
HpaII CCGG 3 cut(s) 35, 344, 536
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 3 cut(s) 196, 379, 599
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 2 cut(s) 173, 454
HpyCH4IV ACGT 2 cut(s) 254, 594
HpyCH4V TGCA 3 cut(s) 227, 463, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 233, 518
HpyF3I CTNAG 1 cut(s) 499
HpySE526I ACGT 2 cut(s) 254, 594
Hsp92II CATG 8 cut(s) 64, 92, 234, 320, 365, 467, 520, 560
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 2 cut(s) 65, 313
LmnI GCTCC 1 cut(s) 509
LweI GCATC 1 cut(s) 6
MabI ACCWGGT 1 cut(s) 430
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 254, 594
MaeIII GTNAC 2 cut(s) 272, 541
MalI GATC 2 cut(s) 67, 315
MboI GATC 2 cut(s) 65, 313
MboII GAAGA 4 cut(s) 138, 141, 304, 396
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 2 cut(s) 96, 328
MnlI CCTC 3 cut(s) 30, 64, 499
MslI CAYNNNNRTG 2 cut(s) 87, 309
MspI CCGG 3 cut(s) 35, 344, 536
MspR9I CCNGG 6 cut(s) 128, 344, 345, 432, 536, 537
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 2 cut(s) 128, 432
MwoI GCNNNNNNNGC 3 cut(s) 206, 233, 518
NciI CCSGG 4 cut(s) 344, 345, 536, 537
NdeII GATC 2 cut(s) 65, 313
NlaIII CATG 8 cut(s) 64, 92, 234, 320, 365, 467, 520, 560
NlaIV GGNNCC 5 cut(s) 52, 83, 353, 476, 522
NmuCI GTSAC 1 cut(s) 541
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 387, 576
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 126, 430
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 2 cut(s) 126, 430
PspN4I GGNNCC 5 cut(s) 52, 83, 353, 476, 522
PspPI GGNCC 3 cut(s) 341, 352, 520
PspPPI RGGWCCY 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 87, 309
Sau3AI GATC 2 cut(s) 65, 313
Sau96I GGNCC 3 cut(s) 341, 352, 520
ScrFI CCNGG 6 cut(s) 128, 344, 345, 432, 536, 537
SduI GDGCHC 1 cut(s) 477
SetI ASST 8 cut(s) 56, 257, 436, 480, 500, 514, 529, 597
SexAI ACCWGGT 1 cut(s) 430
SfaNI GCATC 1 cut(s) 6
SinI GGWCC 1 cut(s) 352
SmaI CCCGGG 2 cut(s) 345, 537
SmiMI CAYNNNNRTG 2 cut(s) 87, 309
SrfI GCCCGGGC 1 cut(s) 345
Sse9I AATT 2 cut(s) 96, 328
SsiI CCGC 2 cut(s) 284, 348
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 6 cut(s) 126, 342, 343, 430, 534, 535
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 2 cut(s) 173, 454
TaiI ACGT 2 cut(s) 257, 597
TasI AATT 2 cut(s) 96, 328
TfiI GAWTC 2 cut(s) 387, 576
TscAI CASTG 2 cut(s) 112, 507
TseFI GTSAC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 5 cut(s) 31, 89, 293, 321, 480
TspMI CCCGGG 2 cut(s) 343, 535
TspRI CASTG 2 cut(s) 112, 507
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 328
XmaI CCCGGG 2 cut(s) 343, 535
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.