RLG00000021940

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000309
Physical Location & Seq
Reverse (-)
79435935 .. 79436821
887 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021940

Sequence Viewer

Length: 588 bp
ATGACGATGATTTCGACGAGCTCTTGGAGGAAGCCGTCAAGACTTAATTACCAGCTCAATTTCCACCTCAAGTCCACCGGAACGTTGGACGGTGCAATTCATACCACTGTTCACTACTCATTTCCCGATGGAAATCTAAAATGGCCTTCTTCAAAATACCATCTGACTTACAGTTTTCTTGCCGGCACCCCATCCGAAGCCCCGGATGCTGTCGCACAGGCTTTCTCAACATGGGCTAAGAACACTCACTTCAAATTCAGCCAGGCTCAAAATTACCAGAGTGAGGATTTGAAGATTAGCTTTCAGAAGGGTGATCATGGAGATGGGAGTTCATTTGATGGGCCTGGAAGACAGCTGGTCCATGCTGCTTACCCTACGGATGGAACTTTGCAGTTTGCACTACGACCAGGTGAGACTTGGTCTGTAGGTGCTAAACCAGGTGCCATAGACATTGAGAGTGTTGGTTTGCATGAAATAGGGCACCTTCTGGGACTTGGACACAGCTCAGTGGAGGGAGCTATCATCAGGCCCGGACTTGATATTTTGAGGCTTGAGGCGAAAAATAAAATGAGCCTACATTTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

196

Amino Acids

21.33

Weight (kDa)

7.2

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M10 PF00413 47 - 180 3.6e-32 Matrixin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 586
AccB1I GGYRCC 3 cut(s) 185, 440, 480
AclI AACGTT 1 cut(s) 83
AcsI RAATTY 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 283, 380
AgsI TTSAA 3 cut(s) 153, 253, 292
AhdI GACNNNNNGTC 1 cut(s) 356
AjnI CCWGG 4 cut(s) 261, 343, 406, 436
AluBI AGCT 6 cut(s) 21, 55, 300, 355, 504, 518
AluI AGCT 6 cut(s) 21, 55, 300, 355, 504, 518
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 407
AoxI GGCC 3 cut(s) 143, 341, 527
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 254
ArsI GACNNNNNNTTYG 1 cut(s) 27
AspS9I GGNCC 3 cut(s) 341, 358, 528
AsuC2I CCSGG 2 cut(s) 203, 531
AsuHPI GGTGA 2 cut(s) 323, 422
AvaII GGWCC 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 3 cut(s) 185, 440, 480
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 352
BccI CCATC 6 cut(s) 122, 168, 199, 317, 332, 374
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 4 cut(s) 263, 345, 408, 438
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 2 cut(s) 203, 531
BcoDI GTCTC 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 423
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
Bme1390I CCNGG 6 cut(s) 203, 263, 345, 408, 438, 531
Bme18I GGWCC 1 cut(s) 358
BmeRI GACNNNNNGTC 1 cut(s) 356
BmgT120I GGNCC 3 cut(s) 341, 358, 528
BmiI GGNNCC 3 cut(s) 187, 442, 482
BmrFI CCNGG 6 cut(s) 203, 263, 345, 408, 438, 531
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 355
BpuEI CTTGAG 2 cut(s) 53, 572
BpuMI CCSGG 2 cut(s) 203, 531
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 380
Bse118I RCCGGY 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 4 cut(s) 263, 345, 408, 438
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 3 cut(s) 191, 211, 385
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 283, 380
BseMII CTCAG 1 cut(s) 519
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 1 cut(s) 352
BshFI GGCC 3 cut(s) 145, 343, 529
BshNI GGYRCC 3 cut(s) 185, 440, 480
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 4 cut(s) 78, 183, 203, 531
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 2 cut(s) 283, 380
BsmAI GTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 504
BsnI GGCC 3 cut(s) 145, 343, 529
Bsp1286I GDGCHC 2 cut(s) 23, 483
Bsp143I GATC 1 cut(s) 313
BspANI GGCC 3 cut(s) 145, 343, 529
BspCNI CTCAG 1 cut(s) 518
BspLI GGNNCC 3 cut(s) 187, 442, 482
BspT107I GGYRCC 3 cut(s) 185, 440, 480
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 313
Bst2UI CCWGG 4 cut(s) 263, 345, 408, 438
Bst4CI ACNGT 3 cut(s) 92, 109, 173
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 237, 505
BstF5I GGATG 3 cut(s) 191, 211, 385
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 4 cut(s) 263, 345, 408, 438
BstSCI CCNGG 6 cut(s) 201, 261, 343, 406, 436, 529
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 483
BstV1I GCAGC 1 cut(s) 352
BstV2I GAAGAC 1 cut(s) 355
BsuRI GGCC 3 cut(s) 145, 343, 529
BtsCI GGATG 3 cut(s) 191, 211, 385
BtsIMutI CAGTG 2 cut(s) 105, 513
Cac8I GCNNGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 3 cut(s) 341, 358, 528
CsiI ACCWGGT 2 cut(s) 406, 436
CviAII CATG 4 cut(s) 231, 317, 362, 470
DdeI CTNAG 2 cut(s) 237, 505
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DriI GACNNNNNGTC 1 cut(s) 356
Eam1105I GACNNNNNGTC 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 21
EcoRII CCWGG 4 cut(s) 261, 343, 406, 436
EcoT38I GRGCYC 1 cut(s) 23
FaeI CATG 4 cut(s) 234, 320, 365, 473
FaiI YATR 7 cut(s) 102, 232, 318, 363, 446, 471, 586
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 1 cut(s) 504
FatI CATG 4 cut(s) 230, 316, 361, 469
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 3 cut(s) 178, 218, 392
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 366
GluI GCNGC 1 cut(s) 366
HaeIII GGCC 3 cut(s) 145, 343, 529
HapII CCGG 4 cut(s) 78, 183, 203, 531
Hin1II CATG 4 cut(s) 234, 320, 365, 473
HpaII CCGG 4 cut(s) 78, 183, 203, 531
HphI GGTGA 2 cut(s) 323, 422
Hpy166II GTNNAC 2 cut(s) 75, 112
Hpy188I TCNGA 3 cut(s) 165, 196, 306
Hpy188III TCNNGA 2 cut(s) 39, 125
Hpy8I GTNNAC 2 cut(s) 75, 112
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 156, 301, 494
HpyCH4III ACNGT 3 cut(s) 92, 109, 173
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 4 cut(s) 95, 391, 398, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 237, 505
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 4 cut(s) 234, 320, 365, 473
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 1 cut(s) 196
MabI ACCWGGT 2 cut(s) 406, 436
MaeII ACGT 1 cut(s) 83
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 3 cut(s) 141, 304, 360
MhlI GDGCHC 2 cut(s) 23, 483
MluCI AATT 5 cut(s) 46, 58, 96, 254, 271
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 6 cut(s) 21, 77, 277, 505, 540, 547
MroNI GCCGGC 1 cut(s) 182
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 355
MspI CCGG 4 cut(s) 78, 183, 203, 531
MspR9I CCNGG 6 cut(s) 203, 263, 345, 408, 438, 531
MvaI CCWGG 4 cut(s) 263, 345, 408, 438
MwoI GCNNNNNNNGC 1 cut(s) 206
NaeI GCCGGC 1 cut(s) 184
NciI CCSGG 2 cut(s) 203, 531
NdeII GATC 1 cut(s) 313
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 4 cut(s) 234, 320, 365, 473
NlaIV GGNNCC 3 cut(s) 187, 442, 482
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdiI GCCGGC 1 cut(s) 184
PflFI GACNNNGTC 1 cut(s) 418
PkrI GCNGC 1 cut(s) 367
PsiI TTATAA 1 cut(s) 586
Psp124BI GAGCTC 1 cut(s) 23
Psp1406I AACGTT 1 cut(s) 83
Psp6I CCWGG 4 cut(s) 261, 343, 406, 436
PspGI CCWGG 4 cut(s) 261, 343, 406, 436
PspN4I GGNNCC 3 cut(s) 187, 442, 482
PspPI GGNCC 3 cut(s) 341, 358, 528
PsyI GACNNNGTC 1 cut(s) 418
PvuII CAGCTG 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 3 cut(s) 341, 358, 528
ScrFI CCNGG 6 cut(s) 203, 263, 345, 408, 438, 531
SduI GDGCHC 2 cut(s) 23, 483
SexAI ACCWGGT 2 cut(s) 406, 436
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 68, 551
SmoI CTYRAG 2 cut(s) 68, 551
Sse9I AATT 5 cut(s) 46, 58, 96, 254, 271
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 6 cut(s) 201, 261, 343, 406, 436, 529
TaaI ACNGT 3 cut(s) 92, 109, 173
TaiI ACGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 14
TasI AATT 5 cut(s) 46, 58, 96, 254, 271
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 112, 513
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 3 cut(s) 89, 321, 486
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 2 cut(s) 112, 513
Tth111I GACNNNGTC 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 2 cut(s) 82, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.