Rmu_sc0012468.1_g000017

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012468.1
OG0000309
Physical Location & Seq
Reverse (-)
63798 .. 64238
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012468.1_g000017.1.cds

Sequence Viewer

Length: 441 bp
ctggcttaccgttttctcgccggcaccccatccgaagccccgggtgctgtcgcacaggctttctcaacatgggctaagaacactcacttcaaattcagcaaggctcaaaatcaccagagtgcggatttgaaggttagctttcataagggtgatcatagagacgggaattcatttgatgggcctggcggacagctggcccatgctgcttaccctacggagggaacattgcactacgaagcagatgagacttggtctgtaggtgctaaaccaggtgccatagacattgagagtgttggtttgcatgaaatagggcaccttctgggacttggacacagctcagtggaggaagctatcatgtatccaaccatccccgagggagtggctcataaaagtttgcatgaggacgatattcaaggaataaaagctttatacaacgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

146

Amino Acids

15.64

Weight (kDa)

5.69

Isoelectric Point (pI)

23.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 23, 272, 312
AciI CCGC 2 cut(s) 122, 186
AclI AACGTT 1 cut(s) 435
AcsI RAATTY 2 cut(s) 92, 166
AfiI CCNNNNNNNGG 3 cut(s) 121, 217, 218
AgsI TTSAA 3 cut(s) 91, 130, 413
AjnI CCWGG 2 cut(s) 181, 268
AleI CACNNNNGTG 1 cut(s) 117
AluBI AGCT 5 cut(s) 138, 193, 336, 350, 425
AluI AGCT 5 cut(s) 138, 193, 336, 350, 425
Alw26I GTCTC 2 cut(s) 153, 239
Ama87I CYCGRG 2 cut(s) 40, 371
AoxI GGCC 2 cut(s) 179, 195
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 92, 166
AspS9I GGNCC 2 cut(s) 179, 196
AsuC2I CCSGG 2 cut(s) 41, 42
AsuHPI GGTGA 2 cut(s) 104, 161
AvaI CYCGRG 2 cut(s) 40, 371
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 3 cut(s) 23, 272, 312
BbvI GCAGC 1 cut(s) 190
BccI CCATC 3 cut(s) 37, 170, 374
BciT130I CCWGG 2 cut(s) 183, 270
BciVI GTATCC 1 cut(s) 369
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 2 cut(s) 41, 42
BcoDI GTCTC 2 cut(s) 153, 239
BfmI CTRYAG 1 cut(s) 255
BfuI GTATCC 1 cut(s) 369
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 4 cut(s) 41, 42, 183, 270
BmeT110I CYCGRG 2 cut(s) 40, 371
BmgT120I GGNCC 2 cut(s) 179, 196
BmiI GGNNCC 3 cut(s) 25, 274, 314
BmrFI CCNGG 4 cut(s) 41, 42, 183, 270
BpuMI CCSGG 2 cut(s) 41, 42
BsaJI CCNNGG 3 cut(s) 39, 40, 372
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 217, 218
Bse118I RCCGGY 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 183, 270
BseDI CCNNGG 3 cut(s) 39, 40, 372
BseGI GGATG 2 cut(s) 29, 366
BseLI CCNNNNNNNGG 3 cut(s) 121, 217, 218
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 351
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 2 cut(s) 181, 197
BshNI GGYRCC 3 cut(s) 23, 272, 312
BsiHKCI CYCGRG 2 cut(s) 40, 371
BsiSI CCGG 2 cut(s) 21, 41
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 3 cut(s) 121, 217, 218
BsmAI GTCTC 2 cut(s) 153, 239
BsmBI CGTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 2 cut(s) 181, 197
BsoBI CYCGRG 2 cut(s) 40, 371
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 2 cut(s) 122, 186
BspANI GGCC 2 cut(s) 181, 197
BspCNI CTCAG 1 cut(s) 350
BspLI GGNNCC 3 cut(s) 25, 274, 314
BspT107I GGYRCC 3 cut(s) 23, 272, 312
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 39, 40, 372
BssMI GATC 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 183, 270
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 22, 195
BstDEI CTNAG 2 cut(s) 75, 337
BstF5I GGATG 2 cut(s) 29, 366
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 2 cut(s) 153, 239
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 44, 203
BstNI CCWGG 2 cut(s) 183, 270
BstSCI CCNGG 4 cut(s) 39, 40, 181, 268
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 190
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 2 cut(s) 181, 197
BtsCI GGATG 2 cut(s) 29, 366
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 22, 195
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 179, 196
Cfr9I CCCGGG 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 268
CviAII CATG 5 cut(s) 69, 200, 302, 355, 398
DdeI CTNAG 2 cut(s) 75, 337
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EciI GGCGGA 1 cut(s) 201
Eco88I CYCGRG 2 cut(s) 40, 371
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 181, 268
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 5 cut(s) 72, 203, 305, 358, 401
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 336
FatI CATG 5 cut(s) 68, 199, 301, 354, 397
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 16, 353
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 2 cut(s) 181, 197
HapII CCGG 2 cut(s) 21, 41
Hin1II CATG 5 cut(s) 72, 203, 305, 358, 401
HindIII AAGCTT 1 cut(s) 423
HpaII CCGG 2 cut(s) 21, 41
HphI GGTGA 2 cut(s) 104, 161
Hpy188I TCNGA 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 124, 326
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 3 cut(s) 229, 301, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 203
HpyF3I CTNAG 2 cut(s) 75, 337
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 5 cut(s) 72, 203, 305, 358, 401
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 1 cut(s) 151
Lsp1109I GCAGC 1 cut(s) 190
MabI ACCWGGT 1 cut(s) 268
MaeII ACGT 1 cut(s) 435
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 2 cut(s) 92, 166
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 4 cut(s) 211, 337, 367, 394
MroNI GCCGGC 1 cut(s) 20
MslI CAYNNNNRTG 2 cut(s) 117, 147
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 2 cut(s) 21, 41
MspR9I CCNGG 4 cut(s) 41, 42, 183, 270
MvaI CCWGG 2 cut(s) 183, 270
MwoI GCNNNNNNNGC 2 cut(s) 44, 203
NaeI GCCGGC 1 cut(s) 22
NciI CCSGG 2 cut(s) 41, 42
NdeII GATC 1 cut(s) 151
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 5 cut(s) 72, 203, 305, 358, 401
NlaIV GGNNCC 3 cut(s) 25, 274, 314
OliI CACNNNNGTG 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 22
PflFI GACNNNGTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 205
Psp1406I AACGTT 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 181, 268
PspGI CCWGG 2 cut(s) 181, 268
PspN4I GGNNCC 3 cut(s) 25, 274, 314
PspPI GGNCC 2 cut(s) 179, 196
PsyI GACNNNGTC 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 117, 147
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 2 cut(s) 179, 196
ScrFI CCNGG 4 cut(s) 41, 42, 183, 270
SduI GDGCHC 1 cut(s) 315
SexAI ACCWGGT 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 255
SmaI CCCGGG 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 117, 147
Sse9I AATT 2 cut(s) 92, 166
SsiI CCGC 2 cut(s) 122, 186
StyD4I CCNGG 4 cut(s) 39, 40, 181, 268
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 438
TasI AATT 2 cut(s) 92, 166
TscAI CASTG 1 cut(s) 345
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 131, 159, 318
TspGWI ACGGA 1 cut(s) 230
TspMI CCCGGG 1 cut(s) 40
TspRI CASTG 1 cut(s) 345
Tth111I GACNNNGTC 1 cut(s) 250
XapI RAATTY 2 cut(s) 92, 166
XmaI CCCGGG 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.