Rh7AG354500

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000309
Physical Location & Seq
Forward (+)
45393524 .. 45394354
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG354500.1

Sequence Viewer

Length: 591 bp
ATGATGACGCCTCGTTGTGGCGTGCCGGATATCATCAATGGCACCTCGTCCATGCGATCAGCCAAGAAAAGGCACCACCATGATTCAATTCATACCACTGCTCACTACTCATTTTTCGAGGGAAATCCAAAATGGCCTTCCTCTAAATACCATCTCACTTACGGTTTTCTCCCCAACACCCCATCCGAAGCCACGGGCGCTGTCGCACGGGCTTTCGCAACATGGGCTGGGAACACTCACTTCACGTTCAGCCAGTCCCAAAGTTATGAGAATGCGGATTTGAAGATTAGTTTTCATAAGGGTGATCATGGAGACGGGTATCCATTTGATGGCCGAGGTGGGGTCCTAGCCCATGCTTTTAGGCCGTCGGATGGAAGATTCCACTACGATGCAGATGAGCCTTGGTCTGTGGGTGCTACACCAGGTGCTTATGACTTGGAGACGGTGGCTTTGCATGAAATAGGGCATCTTCTGGGACTTGGACATAGCTCACTGGAGGGAGCTATCATGGCCCCAGGTATTCCCCCGGGAGTGACTCGAAGTTTGCATGGGGACGATGTTCAAGGAATCAAGGCTTTATACAACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

196

Amino Acids

21.24

Weight (kDa)

6.41

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M10 PF00413 44 - 194 3.9e-46 Matrixin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 72
AccB7I CCANNNNNTGG 1 cut(s) 329
AciI CCGC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 425
AfiI CCNNNNNNNGG 5 cut(s) 17, 69, 329, 340, 371
AgsI TTSAA 3 cut(s) 87, 283, 563
AjnI CCWGG 2 cut(s) 421, 514
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 2 cut(s) 489, 503
AluI AGCT 2 cut(s) 489, 503
Alw26I GTCTC 2 cut(s) 306, 434
Ama87I CYCGRG 1 cut(s) 526
AoxI GGCC 4 cut(s) 134, 331, 362, 510
ArsI GACNNNNNNTTYG 4 cut(s) 433, 465, 526, 558
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 343, 511
AsuC2I CCSGG 2 cut(s) 527, 528
AsuHPI GGTGA 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 1 cut(s) 343
BanI GGYRCC 2 cut(s) 41, 72
BccI CCATC 4 cut(s) 159, 190, 323, 365
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 2 cut(s) 423, 516
BciVI GTATCC 1 cut(s) 330
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 2 cut(s) 527, 528
BcoDI GTCTC 2 cut(s) 306, 434
BfaI CTAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 201
BfuI GTATCC 1 cut(s) 330
Bme1390I CCNGG 4 cut(s) 423, 516, 527, 528
Bme18I GGWCC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 343, 511
BmiI GGNNCC 4 cut(s) 43, 74, 344, 513
BmrFI CCNGG 4 cut(s) 423, 516, 527, 528
BmsI GCATC 2 cut(s) 379, 475
BpmI CTGGAG 1 cut(s) 515
BpuMI CCSGG 2 cut(s) 527, 528
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 6 cut(s) 192, 334, 401, 514, 525, 526
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 69, 329, 340, 371
Bse1I ACTGG 2 cut(s) 253, 498
BseBI CCWGG 2 cut(s) 423, 516
BseDI CCNNGG 6 cut(s) 192, 334, 401, 514, 525, 526
BseGI GGATG 2 cut(s) 182, 376
BseLI CCNNNNNNNGG 5 cut(s) 17, 69, 329, 340, 371
BseNI ACTGG 2 cut(s) 253, 498
BseYI CCCAGC 1 cut(s) 227
BshFI GGCC 4 cut(s) 136, 333, 364, 512
BshNI GGYRCC 2 cut(s) 41, 72
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 2 cut(s) 26, 527
BslFI GGGAC 3 cut(s) 241, 489, 566
BslI CCNNNNNNNGG 5 cut(s) 17, 69, 329, 340, 371
BsmAI GTCTC 2 cut(s) 306, 434
BsmBI CGTCTC 2 cut(s) 306, 434
BsmFI GGGAC 3 cut(s) 241, 489, 566
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 4 cut(s) 136, 333, 364, 512
BsoBI CYCGRG 1 cut(s) 526
Bsp143I GATC 2 cut(s) 56, 304
BspACI CCGC 1 cut(s) 275
BspANI GGCC 4 cut(s) 136, 333, 364, 512
BspLI GGNNCC 4 cut(s) 43, 74, 344, 513
BspT107I GGYRCC 2 cut(s) 41, 72
BsrI ACTGG 2 cut(s) 253, 498
BssECI CCNNGG 6 cut(s) 192, 334, 401, 514, 525, 526
BssMI GATC 2 cut(s) 56, 304
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 2 cut(s) 423, 516
Bst4CI ACNGT 2 cut(s) 164, 445
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 182, 376
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 59, 307
BstMAI GTCTC 2 cut(s) 306, 434
BstMBI GATC 2 cut(s) 56, 304
BstMWI GCNNNNNNNGC 3 cut(s) 197, 224, 509
BstNI CCWGG 2 cut(s) 423, 516
BstSCI CCNGG 4 cut(s) 421, 514, 525, 526
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 4 cut(s) 136, 333, 364, 512
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 182, 376
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 491
Cac8I GCNNGC 1 cut(s) 23
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 343, 511
Cfr9I CCCGGG 1 cut(s) 526
CseI GACGC 1 cut(s) 16
CsiI ACCWGGT 1 cut(s) 421
CviAII CATG 8 cut(s) 52, 80, 222, 308, 353, 455, 508, 548
DpnI GATC 2 cut(s) 58, 306
DpnII GATC 2 cut(s) 56, 304
DraIII CACNNNGTG 1 cut(s) 425
EaeI YGGCCR 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 401
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 421, 514
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
Esp3I CGTCTC 2 cut(s) 306, 434
FaeI CATG 8 cut(s) 55, 83, 225, 311, 356, 458, 511, 551
FaqI GGGAC 3 cut(s) 241, 489, 566
FatI CATG 8 cut(s) 51, 79, 221, 307, 352, 454, 507, 547
FbaI TGATCA 1 cut(s) 304
FokI GGATG 2 cut(s) 169, 383
FspBI CTAG 1 cut(s) 347
GlaI GCGC 1 cut(s) 199
GsaI CCCAGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 515
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 4 cut(s) 136, 333, 364, 512
HapII CCGG 2 cut(s) 26, 527
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 8 cut(s) 55, 83, 225, 311, 356, 458, 511, 551
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 4 cut(s) 83, 378, 535, 567
HpaII CCGG 2 cut(s) 26, 527
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 187, 370, 590
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 2 cut(s) 164, 445
HpyCH4IV ACGT 2 cut(s) 245, 585
HpyCH4V TGCA 3 cut(s) 392, 454, 547
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 224, 509
HpySE526I ACGT 2 cut(s) 245, 585
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 8 cut(s) 55, 83, 225, 311, 356, 458, 511, 551
HspAI GCGC 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 56, 304
LmnI GCTCC 1 cut(s) 500
LweI GCATC 2 cut(s) 379, 475
MabI ACCWGGT 1 cut(s) 421
MaeI CTAG 1 cut(s) 347
MaeII ACGT 2 cut(s) 245, 585
MaeIII GTNAC 1 cut(s) 532
MalI GATC 2 cut(s) 58, 306
MboI GATC 2 cut(s) 56, 304
MboII GAAGA 3 cut(s) 295, 387, 461
MluCI AATT 1 cut(s) 87
MlyI GAGTC 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 6 cut(s) 21, 55, 112, 151, 329, 490
MslI CAYNNNNRTG 3 cut(s) 78, 300, 387
MspI CCGG 2 cut(s) 26, 527
MspR9I CCNGG 4 cut(s) 423, 516, 527, 528
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 2 cut(s) 423, 516
MwoI GCNNNNNNNGC 3 cut(s) 197, 224, 509
NciI CCSGG 2 cut(s) 527, 528
NdeII GATC 2 cut(s) 56, 304
NlaIII CATG 8 cut(s) 55, 83, 225, 311, 356, 458, 511, 551
NlaIV GGNNCC 4 cut(s) 43, 74, 344, 513
NmeAIII GCCGAG 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 532
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 3 cut(s) 83, 378, 567
PflMI CCANNNNNTGG 1 cut(s) 329
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PpuMI RGGWCCY 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 421, 514
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 2 cut(s) 421, 514
PspN4I GGNNCC 4 cut(s) 43, 74, 344, 513
PspPI GGNCC 2 cut(s) 343, 511
PspPPI RGGWCCY 1 cut(s) 343
RseI CAYNNNNRTG 3 cut(s) 78, 300, 387
Sau3AI GATC 2 cut(s) 56, 304
Sau96I GGNCC 2 cut(s) 343, 511
SchI GAGTC 1 cut(s) 529
ScrFI CCNGG 4 cut(s) 423, 516, 527, 528
SetI ASST 8 cut(s) 47, 248, 340, 427, 491, 505, 520, 588
SexAI ACCWGGT 1 cut(s) 421
SfaNI GCATC 2 cut(s) 379, 475
SinI GGWCC 1 cut(s) 343
SmaI CCCGGG 1 cut(s) 528
SmiMI CAYNNNNRTG 3 cut(s) 78, 300, 387
Sse9I AATT 1 cut(s) 87
SsiI CCGC 1 cut(s) 275
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 4 cut(s) 421, 514, 525, 526
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 2 cut(s) 164, 445
TaiI ACGT 2 cut(s) 248, 588
TaqI TCGA 2 cut(s) 117, 538
TasI AATT 1 cut(s) 87
TfiI GAWTC 3 cut(s) 83, 378, 567
TscAI CASTG 2 cut(s) 103, 498
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 3 cut(s) 80, 284, 471
TspMI CCCGGG 1 cut(s) 526
TspRI CASTG 2 cut(s) 103, 498
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 343
XmaI CCCGGG 1 cut(s) 526
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.