Rh7CG371600

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000309
Physical Location & Seq
Forward (+)
46647675 .. 46651563
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG371600.1

Sequence Viewer

Length: 321 bp
ATGGCAAACTCATCTCCGTTTGAGTTCCTTAAGCAGCTTAAGGGTTGTCACAAAAGTGACAAGGTCAAGGGCGTCAATGACCTCAAGAAGTACCTTCAAAAGTTCGGTTACTTAAACTATGAGAACCACAGACATTCTGATGACAATGATTTTGACGAGCTCTTGGAGGAAGCCATCAAGACGTACCAGCTCAATTTCCACCTCAAGTCCACCGGAACGTTGGACGACAAAACCATATCACAGATGATCATGCCTCGTTGTGGTATGTGTGCCCGATATCATCAATGGCACCTCATCCAATTAAGCGATCAGCCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

106

Amino Acids

12.52

Weight (kDa)

7.76

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 24 - 82 5.2e-12 Putative peptidoglycan binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 288
AclI AACGTT 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 92, 185
AfiI CCNNNNNNNGG 1 cut(s) 260
AflII CTTAAG 2 cut(s) 29, 38
AgsI TTSAA 1 cut(s) 98
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 3 cut(s) 37, 160, 190
AluI AGCT 3 cut(s) 37, 160, 190
Alw21I GWGCWC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 34
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
BaeGI GKGCMC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 182
BclI TGATCA 1 cut(s) 246
BfrI CTTAAG 2 cut(s) 29, 38
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 68, 188
BsaHI GRCGYC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 162, 274
Bsp143I GATC 2 cut(s) 246, 307
BspLI GGNNCC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 288
BspTI CTTAAG 2 cut(s) 29, 38
BssMI GATC 2 cut(s) 246, 307
BssNI GRCGYC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 72
BstAFI CTTAAG 2 cut(s) 29, 38
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 2 cut(s) 249, 310
BstMBI GATC 2 cut(s) 246, 307
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 294
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 91, 184
CviAII CATG 1 cut(s) 250
CviJI RGCY 5 cut(s) 37, 160, 173, 190, 313
CviKI_1 RGCY 5 cut(s) 37, 160, 173, 190, 313
CviQI GTAC 2 cut(s) 91, 184
DpnI GATC 2 cut(s) 248, 309
DpnII GATC 2 cut(s) 246, 307
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoRV GATATC 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 1 cut(s) 253
FaiI YATR 4 cut(s) 120, 236, 251, 266
FatI CATG 1 cut(s) 249
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 253
HpaII CCGG 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 85, 178
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 104
HpyCH4IV ACGT 2 cut(s) 182, 218
HpySE526I ACGT 2 cut(s) 182, 218
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 2 cut(s) 246, 307
LpnPI CCDG 2 cut(s) 200, 226
Lsp1109I GCAGC 1 cut(s) 46
MaeII ACGT 2 cut(s) 182, 218
MaeIII GTNAC 3 cut(s) 47, 56, 107
MalI GATC 2 cut(s) 248, 309
MboI GATC 2 cut(s) 246, 307
MhlI GDGCHC 2 cut(s) 162, 274
MluCI AATT 2 cut(s) 193, 299
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 5 cut(s) 92, 160, 212, 264, 302
MseI TTAA 4 cut(s) 30, 39, 113, 302
MslI CAYNNNNRTG 2 cut(s) 54, 138
MspCI CTTAAG 2 cut(s) 29, 38
MspI CCGG 1 cut(s) 213
NdeII GATC 2 cut(s) 246, 307
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 2 cut(s) 47, 56
OliI CACNNNNGTG 1 cut(s) 54
PflFI GACNNNGTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 290
PsyI GACNNNGTC 1 cut(s) 62
RsaI GTAC 2 cut(s) 92, 185
RsaNI GTAC 2 cut(s) 91, 184
RseI CAYNNNNRTG 2 cut(s) 54, 138
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 4 cut(s) 30, 39, 113, 302
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 246, 307
SduI GDGCHC 2 cut(s) 162, 274
SmiMI CAYNNNNRTG 2 cut(s) 54, 138
SmlI CTYRAG 4 cut(s) 29, 38, 83, 203
SmoI CTYRAG 4 cut(s) 29, 38, 83, 203
Sse9I AATT 2 cut(s) 193, 299
SstI GAGCTC 1 cut(s) 162
TaiI ACGT 2 cut(s) 185, 221
TasI AATT 2 cut(s) 193, 299
Tru1I TTAA 4 cut(s) 30, 39, 113, 302
Tru9I TTAA 4 cut(s) 30, 39, 113, 302
TseFI GTSAC 2 cut(s) 47, 56
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 2 cut(s) 47, 56
TspGWI ACGGA 1 cut(s) 6
Tth111I GACNNNGTC 1 cut(s) 62
Vha464I CTTAAG 2 cut(s) 29, 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.