RchiOBHm_Chr7g0222571

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000309
Physical Location & Seq
Forward (+)
44057415 .. 44057879
465 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19922

Sequence Viewer

Length: 465 bp
ATGGCACCAAAATCTGATCTTTCTCTTTTCACAGTCACTCTCCTCCTCCTCCTCGCCTTCTTTTCTTTCCTATCTAATGCAACGGCAAACTCATCTCCGTTTGAGTTCCTTGAGCAGCTTAAGGGTTGTCACAAAGGTGACAAGGTCAAGGGCGTCAATGACCTCAAGAAGTACCTTCAAATGTTCGGTTACTTAAACTATGAGAACCACAGACATTCTGATGACAATGATTTTGACGAGCTCTTGGAGGAAGCCATCAAGACTTACCAGCTCAATTTCCACCTCAAGTCCACCGGAACGTTGGACAACAAAACCATATCACAGATGATCATGCCTCGTTGTGGTATGTGTGCCCGATATCATCAACGGCACCTCATCCATGCGATCAGCCAAGATAAAGCGCCATCACCGTACGTATTTCATCTCACTAGAAAATTAGATTATCATCTTAATTTCATTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

154

Amino Acids

17.83

Weight (kDa)

7.78

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 51 - 109 9.1e-11 Putative peptidoglycan binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 369
AclI AACGTT 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 173, 413
AfiI CCNNNNNNNGG 1 cut(s) 341
AflII CTTAAG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 179
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 3 cut(s) 118, 241, 271
AluI AGCT 3 cut(s) 118, 241, 271
Alw21I GWGCWC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspLEI GCGC 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 149, 399
BaeGI GKGCMC 1 cut(s) 355
BanI GGYRCC 2 cut(s) 4, 369
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 263, 412
BceAI ACGGC 2 cut(s) 99, 383
BclI TGATCA 1 cut(s) 327
BfaI CTAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 404
BfrI CTTAAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmiI GGNNCC 2 cut(s) 6, 371
BpuEI CTTGAG 3 cut(s) 131, 149, 269
BsaAI YACGTR 1 cut(s) 415
BsaBI GATNNNNATC 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 444
BseGI GGATG 1 cut(s) 375
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 341
BseRI GAGGAG 4 cut(s) 32, 35, 38, 41
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 1 cut(s) 127
BshNI GGYRCC 2 cut(s) 4, 369
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 294
BsiWI CGTACG 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 243, 355
Bsp143I GATC 3 cut(s) 16, 327, 384
BspLI GGNNCC 2 cut(s) 6, 371
BspT107I GGYRCC 2 cut(s) 4, 369
BspTI CTTAAG 1 cut(s) 119
BssMI GATC 3 cut(s) 16, 327, 384
BssNI GRCGYC 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 34, 411
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 119
BstBAI YACGTR 1 cut(s) 415
BstF5I GGATG 1 cut(s) 375
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 3 cut(s) 19, 330, 387
BstMBI GATC 3 cut(s) 16, 327, 384
BstSLI GKGCMC 1 cut(s) 355
BstSNI TACGTA 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 375
CfoI GCGC 1 cut(s) 403
CseI GACGC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 172, 412
CviAII CATG 2 cut(s) 331, 380
CviJI RGCY 5 cut(s) 118, 241, 254, 271, 390
CviKI_1 RGCY 5 cut(s) 118, 241, 254, 271, 390
CviQI GTAC 2 cut(s) 172, 412
DpnI GATC 3 cut(s) 18, 329, 386
DpnII GATC 3 cut(s) 16, 327, 384
Ecl136II GAGCTC 1 cut(s) 241
Eco105I TACGTA 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 2 cut(s) 334, 383
FaiI YATR 5 cut(s) 201, 317, 332, 347, 381
FatI CATG 2 cut(s) 330, 379
FbaI TGATCA 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 404
HapII CCGG 1 cut(s) 294
HgaI GACGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 334, 383
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HpaII CCGG 1 cut(s) 294
HphI GGTGA 2 cut(s) 149, 399
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 16, 220
Hpy188III TCNNGA 3 cut(s) 166, 259, 462
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 67, 185
HpyCH4III ACNGT 2 cut(s) 34, 411
HpyCH4IV ACGT 2 cut(s) 299, 414
HpyCH4V TGCA 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 299, 414
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 334, 383
HspAI GCGC 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 16, 327, 384
LpnPI CCDG 2 cut(s) 281, 307
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 429
MaeII ACGT 2 cut(s) 299, 414
MaeIII GTNAC 4 cut(s) 34, 128, 137, 188
MalI GATC 3 cut(s) 18, 329, 386
MboI GATC 3 cut(s) 16, 327, 384
MhlI GDGCHC 2 cut(s) 243, 355
MluCI AATT 3 cut(s) 274, 434, 451
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 9 cut(s) 53, 56, 59, 62, 173, 241, 293, 345, 383
MseI TTAA 3 cut(s) 120, 194, 450
MslI CAYNNNNRTG 2 cut(s) 135, 219
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 1 cut(s) 294
NdeII GATC 3 cut(s) 16, 327, 384
NlaIII CATG 2 cut(s) 334, 383
NlaIV GGNNCC 2 cut(s) 6, 371
NmuCI GTSAC 3 cut(s) 34, 128, 137
OliI CACNNNNGTG 1 cut(s) 135
Pfl23II CGTACG 1 cut(s) 411
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 117
Ppu21I YACGTR 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 299
PspLI CGTACG 1 cut(s) 411
PspN4I GGNNCC 2 cut(s) 6, 371
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 2 cut(s) 173, 413
RsaNI GTAC 2 cut(s) 172, 412
RseI CAYNNNNRTG 2 cut(s) 135, 219
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 3 cut(s) 120, 194, 450
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 3 cut(s) 16, 327, 384
SduI GDGCHC 2 cut(s) 243, 355
SmiMI CAYNNNNRTG 2 cut(s) 135, 219
SmlI CTYRAG 4 cut(s) 110, 119, 164, 284
SmoI CTYRAG 4 cut(s) 110, 119, 164, 284
SnaBI TACGTA 1 cut(s) 415
Sse9I AATT 3 cut(s) 274, 434, 451
SspMI CTAG 1 cut(s) 429
SstI GAGCTC 1 cut(s) 243
TaaI ACNGT 2 cut(s) 34, 411
TaiI ACGT 2 cut(s) 302, 417
TasI AATT 3 cut(s) 274, 434, 451
Tru1I TTAA 3 cut(s) 120, 194, 450
Tru9I TTAA 3 cut(s) 120, 194, 450
TseFI GTSAC 3 cut(s) 34, 128, 137
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 3 cut(s) 34, 128, 137
TspDTI ATGAA 2 cut(s) 410, 445
TspGWI ACGGA 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.