Rh7DG349400

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000309
Physical Location & Seq
Forward (+)
46346319 .. 46347247
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG349400.1

Sequence Viewer

Length: 576 bp
ATGACTCACTCTCCTCCTCCTCCTCGCCCTAGGCTCTTTTCTTTCCTATCTAATGCAACGGCAAACTCATCTCCGTTTGAGTTCCTTGAGCAGCTTAAGGGTTGTCACAAAGGTGACAAGGTCAAGGGCGTCAATGACCTCAAGAAGTACCTTCAAAAGTTCGGTTACTTAAACTATGAGAACCAGAGCCATTCTGATGACAATGATTTTGATGAGCTCTTGGAGGAAGCCATCAAGGCGTACCAGCTCAATTTCCACCTCAAGTCCACCGGAACGTTGGACGACAAAACCATATCACAGATGCTCATGCCTCGTTGTGCTATCCTCCTACTTTGCGCACTTGGATGCCAGAAGCTACACTTCAAAAGTGTCAAGCAATCTGCAGCAGATCCTGGGGTCACTGTCTTTCCGGTTGTCTCTACAACATGCAGCAACATGAGCAGTAGCTCTGAAACAGTCCACGGACAAGCAGTTTGCCAGAATTGTACCAATGATGCAAACCGGAAAATCTTTCAAAGAGTTGTAAAACTGAAGATTCAAAGAAGCTTGGAAGAAGTGGTAATGCCTACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

191

Amino Acids

21.4

Weight (kDa)

8.65

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 43 - 101 4.2e-12 Putative peptidoglycan binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 337
AclI AACGTT 1 cut(s) 275
AclWI GGATC 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 551
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 3 cut(s) 149, 242, 487
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 4 cut(s) 155, 364, 515, 539
AjnI CCWGG 1 cut(s) 391
AleI CACNNNNGTG 1 cut(s) 111
AluBI AGCT 6 cut(s) 94, 217, 247, 355, 447, 546
AluI AGCT 6 cut(s) 94, 217, 247, 355, 447, 546
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 1 cut(s) 383
AlwNI CAGNNNCTG 1 cut(s) 392
ApeKI GCWGC 3 cut(s) 91, 383, 429
ArsI GACNNNNNNTTYG 4 cut(s) 191, 223, 456, 488
AspA2I CCTAGG 1 cut(s) 29
AspLEI GCGC 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 125
AvrII CCTAGG 1 cut(s) 29
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 3 cut(s) 103, 395, 441
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 381
BfrI CTTAAG 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 3 cut(s) 92, 384, 430
BlnI CCTAGG 1 cut(s) 29
BlsI GCNGC 3 cut(s) 93, 385, 431
Bme1390I CCNGG 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 3 cut(s) 291, 335, 484
BpuEI CTTGAG 3 cut(s) 107, 125, 245
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 29, 392, 460
BsaWI WCCGGW 3 cut(s) 269, 409, 501
BsaXI ACNNNNNCTCC 1 cut(s) 25
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 3 cut(s) 29, 392, 460
BseGI GGATG 1 cut(s) 350
BseRI GAGGAG 3 cut(s) 6, 9, 12
BseXI GCAGC 3 cut(s) 103, 395, 441
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 3 cut(s) 270, 410, 502
BsmAI GTCTC 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 388
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 1 cut(s) 383
BspTI CTTAAG 1 cut(s) 95
BssECI CCNNGG 3 cut(s) 29, 392, 460
BssMI GATC 1 cut(s) 388
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 403, 457
BstACI GRCGYC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 460
BstF5I GGATG 1 cut(s) 350
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 1 cut(s) 388
BstMWI GCNNNNNNNGC 2 cut(s) 236, 438
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 103, 395, 441
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BtgI CCRYGG 1 cut(s) 460
BtsCI GGATG 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 338
CseI GACGC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 148, 241, 486
CviAII CATG 3 cut(s) 307, 426, 436
CviJI RGCY 9 cut(s) 34, 94, 189, 217, 230, 247, 355, 447, 546
CviKI_1 RGCY 9 cut(s) 34, 94, 189, 217, 230, 247, 355, 447, 546
CviQI GTAC 3 cut(s) 148, 241, 486
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 3 cut(s) 310, 429, 439
FaiI YATR 5 cut(s) 177, 293, 308, 427, 437
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 3 cut(s) 306, 425, 435
Fnu4HI GCNGC 3 cut(s) 92, 384, 430
FokI GGATG 1 cut(s) 357
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 3 cut(s) 92, 384, 430
FspBI CTAG 1 cut(s) 30
FspI TGCGCA 1 cut(s) 337
GlaI GCGC 1 cut(s) 337
GluI GCNGC 3 cut(s) 92, 384, 430
HapII CCGG 3 cut(s) 270, 410, 502
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 3 cut(s) 310, 429, 439
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 2 cut(s) 4, 535
HpaII CCGG 3 cut(s) 270, 410, 502
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 267, 460
Hpy188I TCNGA 2 cut(s) 196, 451
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 2 cut(s) 267, 460
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 403, 457
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 56, 383, 429, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 438
HpySE526I ACGT 1 cut(s) 275
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 3 cut(s) 310, 429, 439
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 388
LpnPI CCDG 9 cut(s) 197, 257, 283, 362, 378, 405, 423, 491, 515
Lsp1109I GCAGC 3 cut(s) 103, 395, 441
LweI GCATC 3 cut(s) 291, 335, 484
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 4 cut(s) 104, 113, 164, 397
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 2 cut(s) 544, 563
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 2 cut(s) 250, 481
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 9 cut(s) 24, 27, 30, 33, 149, 217, 269, 321, 335
MseI TTAA 2 cut(s) 96, 170
MslI CAYNNNNRTG 3 cut(s) 111, 195, 343
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 3 cut(s) 270, 410, 502
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 236, 438
NdeII GATC 1 cut(s) 388
NlaIII CATG 3 cut(s) 310, 429, 439
NmuCI GTSAC 3 cut(s) 104, 113, 397
NsbI TGCGCA 1 cut(s) 337
NspI RCATGY 1 cut(s) 429
OliI CACNNNNGTG 1 cut(s) 111
PfeI GAWTC 1 cut(s) 535
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 3 cut(s) 93, 385, 431
Psp124BI GAGCTC 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 388
PsyI GACNNNGTC 1 cut(s) 119
RsaI GTAC 3 cut(s) 149, 242, 487
RsaNI GTAC 3 cut(s) 148, 241, 486
RseI CAYNNNNRTG 3 cut(s) 111, 195, 343
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 96, 170
SatI GCNGC 3 cut(s) 92, 384, 430
Sau3AI GATC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 3 cut(s) 291, 335, 484
SfcI CTRYAG 1 cut(s) 381
SmiMI CAYNNNNRTG 3 cut(s) 111, 195, 343
SmlI CTYRAG 4 cut(s) 86, 95, 140, 260
SmoI CTYRAG 4 cut(s) 86, 95, 140, 260
Sse9I AATT 2 cut(s) 250, 481
SspMI CTAG 1 cut(s) 30
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 403, 457
TaiI ACGT 1 cut(s) 278
TasI AATT 2 cut(s) 250, 481
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 2 cut(s) 96, 170
Tru9I TTAA 2 cut(s) 96, 170
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 3 cut(s) 104, 113, 397
TseI GCWGC 3 cut(s) 91, 383, 429
Tsp45I GTSAC 3 cut(s) 104, 113, 397
TspGWI ACGGA 2 cut(s) 63, 477
TspRI CASTG 1 cut(s) 406
Tth111I GACNNNGTC 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 95
XceI RCATGY 1 cut(s) 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmaJI CCTAGG 1 cut(s) 29
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.