RchiOBHm_Chr2g0171951

metalloendoproteinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000309
Physical Location & Seq
Reverse (-)
85493006 .. 85493845
840 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53928

Sequence Viewer

Length: 513 bp
ATGATGACGCCTCGTTGTGGCGTGCCGGATATCATCAATGGCACCACGTCCATGCGATCAGCCAAGAAAAGGCACCACCATGGTTTTCTCCCCGGCACCCGATCTGACGCCACGGCTGCTGTCGCACGGGCTTTCGCAACATGGGCTAGGAACACTCACTTCACGTTCAGCCAGGCCCAAAGTTACGAAAATGCGGATTTAAAGATTAGTTTTCATAAGGGTGATCATGGAGATGGGAGTTCATTTGATGGACCAGGCGGGATCCTAGCCCATGCTTTTTACCCGTCGGATGGAAGATTCCACTACGACGCAGATGAGACTTGGTCTGTGGGTGCTACTCCAGGTGCTGTGGACTTGGAGAGTGTGGCTTTGCATGAAATAGGGCACCTTCTGGGACTTGGACATAGCTCAGTGGAGGGAGCTATCATGGCCCCAGCTATTTCCCCGGGAGTTGCTCGAATAAGTTTGACTGGGGACGATGTTCAAGGAATAAGGGCTCTATACAACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

170

Amino Acids

18.01

Weight (kDa)

6.23

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M10 PF00413 34 - 168 2.7e-47 Matrixin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07510 FvH4_6g49990 FvH4_6g50000 FvH4_6g50010
malus_domestica MD04G1045600.v1.1 MD09G1040300.v1.1 MD09G1040400.v1.1 MD09G1040500.v1.1
prunus_persica Prupe.1G198800_v2.0.a1 Prupe.3G277800_v2.0.a1 Prupe.3G278000_v2.0.a1
pyrus_communis pycom17g03670 pycom17g03680 pycom17g03720 pycom17g03730
rosa_chinensis RchiOBHm_Chr2g0170151 RchiOBHm_Chr2g0170161 RchiOBHm_Chr2g0170221 RchiOBHm_Chr2g0170241 RchiOBHm_Chr2g0170251 RchiOBHm_Chr2g0171951 RchiOBHm_Chr4g0400091 RchiOBHm_Chr7g0222561 RchiOBHm_Chr7g0222571
rosa_laevigata RLG00000009215 RLG00000021923 RLG00000021924 RLG00000021929 RLG00000021930 RLG00000021931 RLG00000021932 RLG00000021936 RLG00000021937 RLG00000021938 RLG00000021940 RLG00000021941 RLG00000029406 RLG00000029407
rosa_multiflora Rmu_co8411991.1_g000001 Rmu_co8418277.1_g000001 Rmu_co8459115.1_g000001 Rmu_sc0000037.1_g000004 Rmu_sc0001605.1_g000012 Rmu_sc0001605.1_g000013 Rmu_sc0001605.1_g000018 Rmu_sc0001605.1_g000019 Rmu_sc0012468.1_g000004 Rmu_sc0012468.1_g000011 Rmu_sc0012468.1_g000017 Rmu_sc0012468.1_g000019 Rmu_sc0012468.1_g000026 Rmu_sc0036734.1_g000001 Rmu_sc0036734.1_g000002 Rmu_sc0036735.1_g000001 Rmu_sc0036735.1_g000002
rosa_roxburghii Rroxscaffold_2G00081470 Rroxscaffold_2G00081540 Rroxscaffold_2G00081550 Rroxscaffold_3G00236660 Rroxscaffold_5G00345030 Rroxscaffold_5G00345060
rosa_rugosa Rorug02G0546300 Rorug02G0546800 Rorug02G0546800 Rorug02G0546800 Rorug02G0546900 Rorug02G0547000.1 Rorug02G0547100 Rorug02G0547300 Rorug04G0022500 Rorug07G0210800 Rorug07G0210900
rosa_samantha Rh2AG618400 Rh2AG618700 Rh2AG618800 Rh2AG619000 Rh2AG619100 Rh2AG631500 Rh2AG631600 Rh2BG630000 Rh2BG644800 Rh2BG644900 Rh2CG599400 Rh2CG599500 Rh2CG599600 Rh2CG599700 Rh2DG642000 Rh2DG642200 Rh2DG642300 Rh2DG642400 Rh2DG642500 Rh2DG642800 Rh2DG642900 Rh4AG098000 Rh4BG096300 Rh4CG107400 Rh4DG092900 Rh7AG354000 Rh7AG354100 Rh7AG354500 Rh7AG354700 Rh7BG342900 Rh7CG371500 Rh7CG371600 Rh7DG349300 Rh7DG349400
rosa_wichuraiana Rw0G015130 Rw0G018360 Rw0G018370 Rw2G051210 Rw2G051220 Rw2G051230 Rw2G051240 Rw2G051260 Rw2G051270 Rw4G008170 Rw7G029780 Rw7G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 41, 72, 95, 384
AciI CCGC 2 cut(s) 194, 258
AclWI GGATC 2 cut(s) 256, 269
AcyI GRCGYC 2 cut(s) 8, 108
AfiI CCNNNNNNNGG 3 cut(s) 17, 69, 290
AgsI TTSAA 1 cut(s) 485
AjiI CACGTC 1 cut(s) 48
AjnI CCWGG 3 cut(s) 171, 253, 340
AluBI AGCT 3 cut(s) 408, 422, 437
AluI AGCT 3 cut(s) 408, 422, 437
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 2 cut(s) 256, 269
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 2 cut(s) 174, 429
ApeKI GCWGC 1 cut(s) 116
AspS9I GGNCC 3 cut(s) 175, 251, 430
AsuC2I CCSGG 3 cut(s) 93, 446, 447
AsuHPI GGTGA 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 387
BamHI GGATCC 1 cut(s) 261
BanI GGYRCC 4 cut(s) 41, 72, 95, 384
BanII GRGCYC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 103
BccI CCATC 3 cut(s) 227, 242, 284
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 3 cut(s) 173, 255, 342
BclI TGATCA 1 cut(s) 223
BcnI CCSGG 3 cut(s) 93, 446, 447
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 147, 266
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 6 cut(s) 93, 173, 255, 342, 446, 447
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 445
BmgBI CACGTC 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 175, 251, 430
BmiI GGNNCC 6 cut(s) 43, 74, 97, 263, 386, 432
BmrFI CCNGG 6 cut(s) 93, 173, 255, 342, 446, 447
BmrI ACTGGG 1 cut(s) 480
BmuI ACTGGG 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 324
BpuMI CCSGG 3 cut(s) 93, 446, 447
BsaHI GRCGYC 2 cut(s) 8, 108
BsaJI CCNNGG 5 cut(s) 79, 91, 111, 444, 445
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 69, 290
Bse1I ACTGG 1 cut(s) 475
BseBI CCWGG 3 cut(s) 173, 255, 342
BseDI CCNNGG 5 cut(s) 79, 91, 111, 444, 445
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 3 cut(s) 17, 69, 290
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 433
BshFI GGCC 2 cut(s) 176, 431
BshNI GGYRCC 4 cut(s) 41, 72, 95, 384
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 3 cut(s) 26, 93, 446
BslFI GGGAC 2 cut(s) 408, 488
BslI CCNNNNNNNGG 3 cut(s) 17, 69, 290
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 2 cut(s) 408, 488
BsnI GGCC 2 cut(s) 176, 431
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 2 cut(s) 387, 499
Bsp143I GATC 4 cut(s) 56, 101, 223, 261
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 2 cut(s) 194, 258
BspANI GGCC 2 cut(s) 176, 431
BspCNI CTCAG 1 cut(s) 422
BspLI GGNNCC 6 cut(s) 43, 74, 97, 263, 386, 432
BspPI GGATC 2 cut(s) 256, 269
BspT107I GGYRCC 4 cut(s) 41, 72, 95, 384
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 5 cut(s) 79, 91, 111, 444, 445
BssMI GATC 4 cut(s) 56, 101, 223, 261
BssNI GRCGYC 2 cut(s) 8, 108
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 3 cut(s) 173, 255, 342
BstACI GRCGYC 2 cut(s) 8, 108
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 409
BstDSI CCRYGG 2 cut(s) 79, 111
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 4 cut(s) 59, 104, 226, 264
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 4 cut(s) 56, 101, 223, 261
BstMWI GCNNNNNNNGC 4 cut(s) 116, 122, 143, 428
BstNI CCWGG 3 cut(s) 173, 255, 342
BstSCI CCNGG 6 cut(s) 91, 171, 253, 340, 444, 445
BstSLI GKGCMC 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 2 cut(s) 176, 431
BtgI CCRYGG 2 cut(s) 79, 111
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 3 cut(s) 175, 251, 430
Cfr9I CCCGGG 1 cut(s) 445
CseI GACGC 3 cut(s) 16, 116, 317
CviAII CATG 7 cut(s) 52, 80, 141, 227, 272, 374, 427
DdeI CTNAG 1 cut(s) 409
DpnI GATC 4 cut(s) 58, 103, 225, 263
DpnII GATC 4 cut(s) 56, 101, 223, 261
DraI TTTAAA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 499
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 445
EcoRII CCWGG 3 cut(s) 171, 253, 340
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 7 cut(s) 55, 83, 144, 230, 275, 377, 430
FaqI GGGAC 2 cut(s) 408, 488
FatI CATG 7 cut(s) 51, 79, 140, 226, 271, 373, 426
FauI CCCGC 1 cut(s) 251
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 147, 266
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 437
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 2 cut(s) 176, 431
HapII CCGG 3 cut(s) 26, 93, 446
HgaI GACGC 3 cut(s) 16, 116, 317
Hin1I GRCGYC 2 cut(s) 8, 108
Hin1II CATG 7 cut(s) 55, 83, 144, 230, 275, 377, 430
HinfI GANTC 1 cut(s) 297
HpaII CCGG 3 cut(s) 26, 93, 446
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 3 cut(s) 106, 289, 512
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 2 cut(s) 289, 311
HpyAV CCTTC 1 cut(s) 398
HpyCH4IV ACGT 3 cut(s) 47, 164, 507
HpyCH4V TGCA 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 122, 143, 428
HpyF3I CTNAG 1 cut(s) 409
HpySE526I ACGT 3 cut(s) 47, 164, 507
Hsp92I GRCGYC 2 cut(s) 8, 108
Hsp92II CATG 7 cut(s) 55, 83, 144, 230, 275, 377, 430
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 4 cut(s) 56, 101, 223, 261
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 2 cut(s) 147, 266
MaeII ACGT 3 cut(s) 47, 164, 507
MaeIII GTNAC 1 cut(s) 182
MalI GATC 4 cut(s) 58, 103, 225, 263
MboI GATC 4 cut(s) 56, 101, 223, 261
MboII GAAGA 1 cut(s) 306
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 2 cut(s) 387, 499
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 2 cut(s) 21, 409
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 4 cut(s) 50, 78, 219, 231
MspI CCGG 3 cut(s) 26, 93, 446
MspR9I CCNGG 6 cut(s) 93, 173, 255, 342, 446, 447
MvaI CCWGG 3 cut(s) 173, 255, 342
MwoI GCNNNNNNNGC 4 cut(s) 116, 122, 143, 428
NciI CCSGG 3 cut(s) 93, 446, 447
NcoI CCATGG 1 cut(s) 79
NdeII GATC 4 cut(s) 56, 101, 223, 261
NlaIII CATG 7 cut(s) 55, 83, 144, 230, 275, 377, 430
NlaIV GGNNCC 6 cut(s) 43, 74, 97, 263, 386, 432
PfeI GAWTC 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 118
Psp6I CCWGG 3 cut(s) 171, 253, 340
PspFI CCCAGC 1 cut(s) 433
PspGI CCWGG 3 cut(s) 171, 253, 340
PspN4I GGNNCC 6 cut(s) 43, 74, 97, 263, 386, 432
PspPI GGNCC 3 cut(s) 175, 251, 430
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 322
RseI CAYNNNNRTG 4 cut(s) 50, 78, 219, 231
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 4 cut(s) 56, 101, 223, 261
Sau96I GGNCC 3 cut(s) 175, 251, 430
ScrFI CCNGG 6 cut(s) 93, 173, 255, 342, 446, 447
SduI GDGCHC 2 cut(s) 387, 499
SetI ASST 8 cut(s) 50, 167, 346, 390, 410, 424, 439, 510
SinI GGWCC 1 cut(s) 251
SmaI CCCGGG 1 cut(s) 447
SmiMI CAYNNNNRTG 4 cut(s) 50, 78, 219, 231
SsiI CCGC 2 cut(s) 194, 258
SspMI CTAG 2 cut(s) 147, 266
StyD4I CCNGG 6 cut(s) 91, 171, 253, 340, 444, 445
StyI CCWWGG 1 cut(s) 79
TaiI ACGT 3 cut(s) 50, 167, 510
TaqI TCGA 1 cut(s) 457
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 417
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 203, 231, 390
TspMI CCCGGG 1 cut(s) 445
TspRI CASTG 1 cut(s) 417
Tth111I GACNNNGTC 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 251
XmaI CCCGGG 1 cut(s) 445
XspI CTAG 2 cut(s) 147, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.