Prupe.3G287400_v2.0.a1

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000338
Physical Location & Seq
Forward (+)
25929017 .. 25934479
5463 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G287400.2

Sequence Viewer

Length: 1755 bp
ATGGATGGAAATACTTCTGGCGAAGATGGGAATGATATTGACTGGAATACAGAAGATGAGCTGGAAATTGATAACTTCACTTTATCTTCTTCTTCAAGTCTGACAGTTCCTGGTGGAGAAGCTGTTGTGGGCTGTGGGGAGTCAAGCTCATCTCCAGGTCCTTCCAATTCCAAAGTTGTTGATCATTTTATTGGGATGGGATTTTCTGGAAAAATGGTTGCCAAAGCAATTCAGGAACATGGAGAGGAGAATACGGATTCAATTCTGGAAACCCTCCTCACATATTCGGCTCTTGAAAGTTCTCCTCAAGAACAGCAACAAGTTGATTGTAATCACTGTTCTTCTGATAATGAAGAGAGTTTTCTGGATGATTTTTCAGATATGGATAGCTTTTCTGATAATGAGGAAATCATAAATCCTACATCTGAGAAAGAGAAAAAGATATTGTCCTTGGTCAATATGGGGTACACGGTAGAGGAGGCTTCAATAGCAATAGAAAGATGTGGTCTTGACTCCACGGTTGTTGAGTTGACTGATTTCATATTTGCTGCTCAGACGGCAAAGGCAGAAGATGTCAATTTTCCTCTTGAAGAGAAGCCTAGACCAAATCATGCATACAAGAAGAGGAAACTTCTTGAGTACGAGATGCTGAAAAAGAAAAGGCAGATGCGACTTGGGAACCAGACCACAGGTGAAGATGATGAGACAGTTCATCTCCCAAATCCAATGGTTGGGTTTGGCATCCCATCTGAACCATGTTTGAAAACACAGAGGAATCTTCCAGAGGGAGCTAGAGGGCCACCATATTTCTACTATGAGAATGTGGCACTTGCTCCTAAAGGGGTTTGGACCACTATATCCCGCTTCCTGTATGACGTGCAACCGGAGTTTGTTGACTCCAAGTACTTTTGTGCGGCCGCGAGGAAAAGAGGTTATGTTCACAATCTTCCTCTTGATAATAGATTTCCTCTTATTCCACTTCCTCCAAACACCATACATGAGGCATTTCCCTTGACAAGGAAATGGTGGCCTTCATGGGACACACGGACAAAGCTGAACTGCTTGCAAACTTGCATTGCCAGTGCAAAATTAACAGAGAGGATCAGGAAGGCTATTGAGGATTATGATGGTGAACCACCACTGGGAGTCCAAAAGTATGTTCTTGATGAATGCCGGAAGTGGAATCTGGTGTGGGTAGGAAGAAACAAGGTCGCCCCACTTGAGCCTGATGAAGTGGAAATGCTTTTGGGATTCCCAAAGAACCACACAAGGGGAATAAGCAGGACTGACAGATACAAATCACTCGGGAATTCATTCCAGGTTGATACCGTGGCATACCATCTGTCAGTTTTGAGAGAGATGTTTCCTAATGGCATAAACCTCCTGTCTCTTTTCTCTGGGATTGGCGGGGCAGAAATAGCTCTTCACCGGCTTGGTATCCCTCTGAAGAATGTCGTGTCGGTAGAGAAATCTGCAGTGAACAGAAGTGTTGTGAGGAGTTGGTGGGAGCAAACAAACCAGAGAGGGAATTTGTATGACCTTGATGATGTACAGCAGCTGAATGGTGACAGCCTGGAGCATTATATGAATTTATTTGGTGGTTTTGATCTTGTAGTTGGTGGGAGTCCATGTAACAATCTTGCAGGCAGCAACAGGCATCATCGAGATGGACTCGAGGGTAAAGAATCTTCGCTCTTCTATGACTACTTTCGTATACTAGACTTGGTCAAGTGTATAATGTCAAAGAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

585

Amino Acids

65.58

Weight (kDa)

5.01

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 731
AccI GTMKAC 1 cut(s) 1714
AccII CGCG 1 cut(s) 920
AciI CCGC 4 cut(s) 862, 914, 918, 1407
AclWI GGATC 1 cut(s) 1109
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 3 cut(s) 1309, 1528, 1588
AcuI CTGAAG 1 cut(s) 1466
AfaI GTAC 4 cut(s) 467, 641, 905, 1551
AfiI CCNNNNNNNGG 4 cut(s) 731, 1017, 1142, 1270
AgsI TTSAA 6 cut(s) 96, 261, 296, 486, 590, 763
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 4 cut(s) 109, 154, 1317, 1572
AjuI GAANNNNNNNTTGG 2 cut(s) 1143, 1175
AluBI AGCT 8 cut(s) 61, 122, 147, 390, 791, 1054, 1421, 1558
AluI AGCT 8 cut(s) 61, 122, 147, 390, 791, 1054, 1421, 1558
Alw26I GTCTC 2 cut(s) 698, 1392
AlwI GGATC 1 cut(s) 1109
AlwNI CAGNNNCTG 2 cut(s) 110, 1558
Ama87I CYCGRG 2 cut(s) 1304, 1673
AoxI GGCC 3 cut(s) 797, 915, 1028
ApeKI GCWGC 3 cut(s) 548, 1555, 1647
ApoI RAATTY 3 cut(s) 1309, 1528, 1588
Asp700I GAANNNNTTC 2 cut(s) 13, 1313
AspS9I GGNCC 3 cut(s) 158, 797, 849
AsuHPI GGTGA 4 cut(s) 704, 1142, 1418, 1577
AvaI CYCGRG 2 cut(s) 1304, 1673
AvaII GGWCC 2 cut(s) 158, 849
BarI GAAGNNNNNNTAC 2 cut(s) 1672, 1704
BbvI GCAGC 3 cut(s) 535, 1567, 1659
BccI CCATC 6 cut(s) 20, 190, 754, 1121, 1347, 1661
BceAI ACGGC 1 cut(s) 573
BciT130I CCWGG 4 cut(s) 111, 156, 1319, 1574
BciVI GTATCC 1 cut(s) 1448
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 698, 1392
BfaI CTAG 3 cut(s) 600, 792, 1718
BfmI CTRYAG 1 cut(s) 1473
BfuI GTATCC 1 cut(s) 1448
BisI GCNGC 5 cut(s) 549, 915, 918, 1556, 1648
BlsI GCNGC 5 cut(s) 550, 916, 919, 1557, 1649
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 4 cut(s) 111, 156, 1319, 1574
Bme18I GGWCC 2 cut(s) 158, 849
BmeT110I CYCGRG 2 cut(s) 1304, 1673
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 3 cut(s) 158, 797, 849
BmiI GGNNCC 1 cut(s) 680
BmrFI CCNGG 4 cut(s) 111, 156, 1319, 1574
BmrI ACTGGG 1 cut(s) 1151
BmsI GCATC 4 cut(s) 636, 657, 750, 1666
BmuI ACTGGG 1 cut(s) 1151
BplI GAGNNNNNCTC 4 cut(s) 131, 163, 1656, 1688
BpmI CTGGAG 2 cut(s) 138, 1595
BpuEI CTTGAG 3 cut(s) 291, 656, 1241
BsaBI GATNNNNATC 2 cut(s) 330, 1297
BsaJI CCNNGG 3 cut(s) 450, 516, 1329
BsaWI WCCGGW 1 cut(s) 883
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 1615, 1645
Bsc4I CCNNNNNNNGG 4 cut(s) 731, 1017, 1142, 1270
Bse118I RCCGGY 1 cut(s) 1428
Bse1I ACTGG 3 cut(s) 47, 1080, 1146
Bse3DI GCAATG 1 cut(s) 1074
Bse8I GATNNNNATC 2 cut(s) 330, 1297
BseBI CCWGG 4 cut(s) 111, 156, 1319, 1574
BseDI CCNNGG 3 cut(s) 450, 516, 1329
BseGI GGATG 4 cut(s) 10, 201, 373, 741
BseJI GATNNNNATC 2 cut(s) 330, 1297
BseLI CCNNNNNNNGG 4 cut(s) 731, 1017, 1142, 1270
BseMI GCAATG 1 cut(s) 1074
BseMII CTCAG 2 cut(s) 417, 566
BseNI ACTGG 3 cut(s) 47, 1080, 1146
BseRI GAGGAG 5 cut(s) 260, 266, 294, 491, 1510
BseX3I CGGCCG 1 cut(s) 915
BseXI GCAGC 3 cut(s) 535, 1567, 1659
Bsh1236I CGCG 1 cut(s) 920
Bsh1285I CGRYCG 1 cut(s) 918
BshFI GGCC 3 cut(s) 799, 917, 1030
BsiEI CGRYCG 1 cut(s) 918
BsiHKCI CYCGRG 2 cut(s) 1304, 1673
BsiSI CCGG 3 cut(s) 884, 1174, 1429
BslFI GGGAC 1 cut(s) 1052
BslI CCNNNNNNNGG 4 cut(s) 731, 1017, 1142, 1270
BsmAI GTCTC 2 cut(s) 698, 1392
BsmFI GGGAC 1 cut(s) 1052
BsmI GAATGC 1 cut(s) 1175
BsnI GGCC 3 cut(s) 799, 917, 1030
BsoBI CYCGRG 2 cut(s) 1304, 1673
Bsp1407I TGTACA 1 cut(s) 1549
Bsp143I GATC 3 cut(s) 181, 1101, 1606
BspACI CCGC 4 cut(s) 862, 914, 918, 1407
BspANI GGCC 3 cut(s) 799, 917, 1030
BspCNI CTCAG 2 cut(s) 418, 565
BspFNI CGCG 1 cut(s) 920
BspLI GGNNCC 1 cut(s) 680
BspMAI CTGCAG 1 cut(s) 1477
BspPI GGATC 1 cut(s) 1109
BspQI GCTCTTC 2 cut(s) 1428, 1700
BsrDI GCAATG 1 cut(s) 1074
BsrFI RCCGGY 1 cut(s) 1428
BsrGI TGTACA 1 cut(s) 1549
BsrI ACTGG 3 cut(s) 47, 1080, 1146
BssAI RCCGGY 1 cut(s) 1428
BssECI CCNNGG 3 cut(s) 450, 516, 1329
BssMI GATC 3 cut(s) 181, 1101, 1606
BssNAI GTATAC 1 cut(s) 1715
BssT1I CCWWGG 1 cut(s) 450
Bst1107I GTATAC 1 cut(s) 1715
Bst2UI CCWGG 4 cut(s) 111, 156, 1319, 1574
Bst4CI ACNGT 6 cut(s) 106, 338, 472, 520, 709, 1330
Bst6I CTCTTC 5 cut(s) 348, 585, 617, 1428, 1700
BstAUI TGTACA 1 cut(s) 1549
BstC8I GCNNGC 2 cut(s) 1064, 1645
BstDEI CTNAG 2 cut(s) 426, 552
BstDSI CCRYGG 2 cut(s) 516, 1329
BstENI CCTNNNNNAGG 1 cut(s) 1015
BstF5I GGATG 4 cut(s) 10, 201, 373, 741
BstFNI CGCG 1 cut(s) 920
BstKTI GATC 3 cut(s) 184, 1104, 1609
BstMAI GTCTC 2 cut(s) 698, 1392
BstMBI GATC 3 cut(s) 181, 1101, 1606
BstMCI CGRYCG 1 cut(s) 918
BstMWI GCNNNNNNNGC 3 cut(s) 488, 557, 1418
BstNI CCWGG 4 cut(s) 111, 156, 1319, 1574
BstSCI CCNGG 4 cut(s) 109, 154, 1317, 1572
BstSFI CTRYAG 1 cut(s) 1473
BstUI CGCG 1 cut(s) 920
BstV1I GCAGC 3 cut(s) 535, 1567, 1659
BstZ17I GTATAC 1 cut(s) 1715
BstZI CGGCCG 1 cut(s) 915
BsuI GTATCC 1 cut(s) 1448
BsuRI GGCC 3 cut(s) 799, 917, 1030
BtgI CCRYGG 2 cut(s) 516, 1329
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 4 cut(s) 10, 201, 373, 741
BtsI GCAGTG 1 cut(s) 1482
BtsIMutI CAGTG 4 cut(s) 334, 1087, 1139, 1482
Cac8I GCNNGC 2 cut(s) 1064, 1645
CaiI CAGNNNCTG 2 cut(s) 110, 1558
CciNI GCGGCCGC 1 cut(s) 915
Cfr10I RCCGGY 1 cut(s) 1428
Cfr13I GGNCC 3 cut(s) 158, 797, 849
Csp6I GTAC 4 cut(s) 466, 640, 904, 1550
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 6 cut(s) 239, 611, 756, 998, 1035, 1629
CviQI GTAC 4 cut(s) 466, 640, 904, 1550
DdeI CTNAG 2 cut(s) 426, 552
DpnI GATC 3 cut(s) 183, 1103, 1608
DpnII GATC 3 cut(s) 181, 1101, 1606
EaeI YGGCCR 1 cut(s) 915
EagI CGGCCG 1 cut(s) 915
Eam1104I CTCTTC 5 cut(s) 348, 585, 617, 1428, 1700
EarI CTCTTC 5 cut(s) 348, 585, 617, 1428, 1700
EclXI CGGCCG 1 cut(s) 915
Eco130I CCWWGG 1 cut(s) 450
Eco47I GGWCC 2 cut(s) 158, 849
Eco52I CGGCCG 1 cut(s) 915
Eco57I CTGAAG 1 cut(s) 1466
Eco88I CYCGRG 2 cut(s) 1304, 1673
EcoNI CCTNNNNNAGG 1 cut(s) 1015
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 1309
EcoRII CCWGG 4 cut(s) 109, 154, 1317, 1572
EcoT14I CCWWGG 1 cut(s) 450
EcoT22I ATGCAT 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 6 cut(s) 242, 614, 759, 1001, 1038, 1632
FaqI GGGAC 1 cut(s) 1052
FatI CATG 6 cut(s) 238, 610, 755, 997, 1034, 1628
FauI CCCGC 2 cut(s) 869, 1400
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 1714
Fnu4HI GCNGC 5 cut(s) 549, 915, 918, 1556, 1648
FokI GGATG 4 cut(s) 17, 208, 380, 728
Fsp4HI GCNGC 5 cut(s) 549, 915, 918, 1556, 1648
FspBI CTAG 3 cut(s) 600, 792, 1718
GluI GCNGC 5 cut(s) 549, 915, 918, 1556, 1648
GsuI CTGGAG 2 cut(s) 138, 1595
HaeIII GGCC 3 cut(s) 799, 917, 1030
HapII CCGG 3 cut(s) 884, 1174, 1429
Hin1II CATG 6 cut(s) 242, 614, 759, 1001, 1038, 1632
HincII GTYRAC 2 cut(s) 531, 895
HindII GTYRAC 2 cut(s) 531, 895
HpaII CCGG 3 cut(s) 884, 1174, 1429
HphI GGTGA 4 cut(s) 704, 1142, 1418, 1577
Hpy166II GTNNAC 7 cut(s) 468, 531, 895, 940, 1133, 1480, 1715
Hpy188I TCNGA 8 cut(s) 102, 346, 379, 397, 427, 555, 751, 1446
Hpy8I GTNNAC 7 cut(s) 468, 531, 895, 940, 1133, 1480, 1715
HpyAV CCTTC 3 cut(s) 171, 1041, 1102
HpyCH4III ACNGT 6 cut(s) 106, 338, 472, 520, 709, 1330
HpyCH4IV ACGT 1 cut(s) 876
HpyCH4V TGCA 7 cut(s) 614, 880, 1066, 1074, 1085, 1475, 1643
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 557, 1418
HpyF3I CTNAG 2 cut(s) 426, 552
HpySE526I ACGT 1 cut(s) 876
Hsp92II CATG 6 cut(s) 242, 614, 759, 1001, 1038, 1632
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 3 cut(s) 181, 1101, 1606
LguI GCTCTTC 2 cut(s) 1428, 1700
LmnI GCTCC 4 cut(s) 788, 838, 1507, 1576
Lsp1109I GCAGC 3 cut(s) 535, 1567, 1659
LweI GCATC 4 cut(s) 636, 657, 750, 1666
MaeI CTAG 3 cut(s) 600, 792, 1718
MaeII ACGT 1 cut(s) 876
MaeIII GTNAC 2 cut(s) 1565, 1631
MalI GATC 3 cut(s) 183, 1103, 1608
MboI GATC 3 cut(s) 181, 1101, 1606
MfeI CAATTG 1 cut(s) 1750
MlyI GAGTC 6 cut(s) 149, 506, 890, 1155, 1633, 1665
Mph1103I ATGCAT 1 cut(s) 616
MroXI GAANNNNTTC 2 cut(s) 13, 1313
MseI TTAA 1 cut(s) 1091
MslI CAYNNNNRTG 1 cut(s) 1665
MspA1I CMGCKG 1 cut(s) 1558
MspI CCGG 3 cut(s) 884, 1174, 1429
MspR9I CCNGG 4 cut(s) 111, 156, 1319, 1574
MunI CAATTG 1 cut(s) 1750
Mva1269I GAATGC 1 cut(s) 1175
MvaI CCWGG 4 cut(s) 111, 156, 1319, 1574
MvnI CGCG 1 cut(s) 920
MwoI GCNNNNNNNGC 3 cut(s) 488, 557, 1418
NdeII GATC 3 cut(s) 181, 1101, 1606
NlaIII CATG 6 cut(s) 242, 614, 759, 1001, 1038, 1632
NlaIV GGNNCC 1 cut(s) 680
NmuCI GTSAC 1 cut(s) 1565
NotI GCGGCCGC 1 cut(s) 915
NsiI ATGCAT 1 cut(s) 616
PaeR7I CTCGAG 1 cut(s) 1673
PciSI GCTCTTC 2 cut(s) 1428, 1700
PctI GAATGC 1 cut(s) 1175
PdmI GAANNNNTTC 2 cut(s) 13, 1313
PfeI GAWTC 5 cut(s) 257, 775, 1183, 1251, 1685
PflFI GACNNNGTC 1 cut(s) 1724
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 5 cut(s) 550, 916, 919, 1557, 1649
PleI GAGTC 6 cut(s) 148, 506, 890, 1154, 1632, 1665
PpsI GAGTC 6 cut(s) 148, 506, 890, 1154, 1632, 1665
PpuMI RGGWCCY 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 158
Psp6I CCWGG 4 cut(s) 109, 154, 1317, 1572
PspGI CCWGG 4 cut(s) 109, 154, 1317, 1572
PspN4I GGNNCC 1 cut(s) 680
PspPI GGNCC 3 cut(s) 158, 797, 849
PspPPI RGGWCCY 1 cut(s) 158
PspXI VCTCGAGB 1 cut(s) 1673
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
PstI CTGCAG 1 cut(s) 1477
PstNI CAGNNNCTG 2 cut(s) 110, 1558
PsyI GACNNNGTC 1 cut(s) 1724
PvuII CAGCTG 1 cut(s) 1558
RsaI GTAC 4 cut(s) 467, 641, 905, 1551
RsaNI GTAC 4 cut(s) 466, 640, 904, 1550
RseI CAYNNNNRTG 1 cut(s) 1665
SapI GCTCTTC 2 cut(s) 1428, 1700
SaqAI TTAA 1 cut(s) 1091
SatI GCNGC 5 cut(s) 549, 915, 918, 1556, 1648
Sau3AI GATC 3 cut(s) 181, 1101, 1606
Sau96I GGNCC 3 cut(s) 158, 797, 849
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 6 cut(s) 149, 506, 890, 1155, 1633, 1665
ScrFI CCNGG 4 cut(s) 111, 156, 1319, 1574
SfaNI GCATC 4 cut(s) 636, 657, 750, 1666
SfcI CTRYAG 1 cut(s) 1473
Sfr274I CTCGAG 1 cut(s) 1673
SinI GGWCC 2 cut(s) 158, 849
SlaI CTCGAG 1 cut(s) 1673
SmiMI CAYNNNNRTG 1 cut(s) 1665
SmlI CTYRAG 4 cut(s) 306, 635, 1220, 1673
SmoI CTYRAG 4 cut(s) 306, 635, 1220, 1673
SsiI CCGC 4 cut(s) 862, 914, 918, 1407
SspMI CTAG 3 cut(s) 600, 792, 1718
StyD4I CCNGG 4 cut(s) 109, 154, 1317, 1572
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 6 cut(s) 106, 338, 472, 520, 709, 1330
TaiI ACGT 1 cut(s) 879
TaqI TCGA 2 cut(s) 1663, 1674
TatI WGTACW 2 cut(s) 903, 1549
TauI GCSGC 2 cut(s) 917, 920
TfiI GAWTC 5 cut(s) 257, 775, 1183, 1251, 1685
Tru1I TTAA 1 cut(s) 1091
Tru9I TTAA 1 cut(s) 1091
TscAI CASTG 4 cut(s) 341, 1087, 1146, 1482
TseFI GTSAC 1 cut(s) 1565
TseI GCWGC 3 cut(s) 548, 1555, 1647
Tsp45I GTSAC 1 cut(s) 1565
TspDTI ATGAA 8 cut(s) 366, 529, 701, 1023, 1182, 1245, 1302, 1601
TspGWI ACGGA 2 cut(s) 269, 1060
TspRI CASTG 4 cut(s) 341, 1087, 1146, 1482
Tth111I GACNNNGTC 1 cut(s) 1724
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 2 cut(s) 158, 849
XagI CCTNNNNNAGG 1 cut(s) 1015
XapI RAATTY 3 cut(s) 1309, 1528, 1588
XhoI CTCGAG 1 cut(s) 1673
XmiI GTMKAC 1 cut(s) 1714
XmnI GAANNNNTTC 2 cut(s) 13, 1313
XspI CTAG 3 cut(s) 600, 792, 1718
ZrmI AGTACT 1 cut(s) 905
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.