Rmu_sc0007485.1_g000011

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007485.1
OG0000338
Physical Location & Seq
Forward (+)
48659 .. 49229
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007485.1_g000011.1.cds

Sequence Viewer

Length: 480 bp
atgggacatgggaaccagatcatcggggaagatgctgatgcaattcatctcccaaatccaatgattgggtttgggactcgagctgatctctgtcaaaaccacagaagttttccagagccagccacaggatctctttatttttactatgagaatgtggcattgactcctaaaggagtttggagcacaatatcctgctttttgtatgacctgaaacctgagtttgttgattcgaagtctttttttgctgctgcaagcaagaggggttatgttcacaatcttcctatcaaaaacagatttcctctcacttgcattgctagtgcaacaattactgagagggtcaggaaggctcttaatgactatgacgaagatgaaatcccaccagaaagtgtctgtcgctatgtacttcatgaatgccgcaagtggaatcttgtttgggtaggaaagaaaaaggtggccccacttgagcctgatgaagtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

159

Amino Acids

18.01

Weight (kDa)

6.2

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 65
AciI CCGC 1 cut(s) 415
AclWI GGATC 1 cut(s) 136
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 65, 125
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 185
AlwI GGATC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 78
AoxI GGCC 1 cut(s) 453
ApeKI GCWGC 2 cut(s) 245, 248
AspS9I GGNCC 1 cut(s) 454
AsuII TTCGAA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 232, 235
BfaI CTAG 1 cut(s) 315
BisI GCNGC 3 cut(s) 246, 249, 415
BlsI GCNGC 3 cut(s) 247, 250, 416
BmeT110I CYCGRG 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 14, 456
BmsI GCATC 2 cut(s) 22, 28
BplI GAGNNNNNCTC 2 cut(s) 72, 104
Bpu14I TTCGAA 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 125
Bse3DI GCAATG 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 65, 125
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 207, 321
BseXI GCAGC 2 cut(s) 232, 235
BshFI GGCC 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 78
BslFI GGGAC 2 cut(s) 18, 88
BslI CCNNNNNNNGG 2 cut(s) 65, 125
BsmFI GGGAC 2 cut(s) 18, 88
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 1 cut(s) 455
BsoBI CYCGRG 1 cut(s) 78
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 3 cut(s) 18, 85, 128
BspACI CCGC 1 cut(s) 415
BspANI GGCC 1 cut(s) 455
BspCNI CTCAG 2 cut(s) 208, 322
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 14, 456
BspPI GGATC 1 cut(s) 136
BspT104I TTCGAA 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 309
BssMI GATC 3 cut(s) 18, 85, 128
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 120, 253
BstDEI CTNAG 2 cut(s) 216, 330
BstKTI GATC 3 cut(s) 21, 88, 131
BstMBI GATC 3 cut(s) 18, 85, 128
BstV1I GCAGC 2 cut(s) 232, 235
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 455
Cac8I GCNNGC 2 cut(s) 120, 253
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 401
CviAII CATG 2 cut(s) 8, 407
CviJI RGCY 6 cut(s) 83, 118, 122, 347, 455, 466
CviKI_1 RGCY 6 cut(s) 83, 118, 122, 347, 455, 466
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 2 cut(s) 216, 330
DpnI GATC 3 cut(s) 20, 87, 130
DpnII GATC 3 cut(s) 18, 85, 128
Eco88I CYCGRG 1 cut(s) 78
FaeI CATG 2 cut(s) 11, 410
FaiI YATR 8 cut(s) 9, 147, 204, 267, 360, 399, 408, 478
FaqI GGGAC 2 cut(s) 18, 88
FatI CATG 2 cut(s) 7, 406
Fnu4HI GCNGC 3 cut(s) 246, 249, 415
Fsp4HI GCNGC 3 cut(s) 246, 249, 415
FspBI CTAG 1 cut(s) 315
GluI GCNGC 3 cut(s) 246, 249, 415
HaeIII GGCC 1 cut(s) 455
Hin1II CATG 2 cut(s) 11, 410
HinfI GANTC 4 cut(s) 76, 163, 227, 424
Hpy166II GTNNAC 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 113, 340, 407
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 1 cut(s) 337
HpyCH4V TGCA 4 cut(s) 41, 251, 309, 320
HpyF3I CTNAG 2 cut(s) 216, 330
Hsp92II CATG 2 cut(s) 11, 410
Kzo9I GATC 3 cut(s) 18, 85, 128
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 9 cut(s) 29, 111, 126, 132, 205, 221, 228, 325, 393
Lsp1109I GCAGC 2 cut(s) 232, 235
LweI GCATC 2 cut(s) 22, 28
MaeI CTAG 1 cut(s) 315
MalI GATC 3 cut(s) 20, 87, 130
MboI GATC 3 cut(s) 18, 85, 128
MboII GAAGA 3 cut(s) 41, 269, 377
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 2 cut(s) 42, 324
MlyI GAGTC 2 cut(s) 70, 157
MnlI CCTC 3 cut(s) 252, 309, 327
MseI TTAA 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 416
NdeII GATC 3 cut(s) 18, 85, 128
NlaIII CATG 2 cut(s) 11, 410
NlaIV GGNNCC 2 cut(s) 14, 456
NspV TTCGAA 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 78
PagI TCATGA 1 cut(s) 406
PctI GAATGC 1 cut(s) 416
PfeI GAWTC 2 cut(s) 227, 424
PflMI CCANNNNNTGG 1 cut(s) 65
PkrI GCNGC 3 cut(s) 247, 250, 416
PleI GAGTC 2 cut(s) 70, 157
PpsI GAGTC 2 cut(s) 70, 157
PspN4I GGNNCC 2 cut(s) 14, 456
PspPI GGNCC 1 cut(s) 454
PspXI VCTCGAGB 1 cut(s) 78
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 3 cut(s) 246, 249, 415
Sau3AI GATC 3 cut(s) 18, 85, 128
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 2 cut(s) 70, 157
SduI GDGCHC 1 cut(s) 185
SetI ASST 4 cut(s) 85, 210, 217, 453
SfaNI GCATC 2 cut(s) 22, 28
Sfr274I CTCGAG 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 78, 461
SmoI CTYRAG 2 cut(s) 78, 461
Sse9I AATT 2 cut(s) 42, 324
SsiI CCGC 1 cut(s) 415
SspMI CTAG 1 cut(s) 315
TaqI TCGA 2 cut(s) 79, 230
TasI AATT 2 cut(s) 42, 324
TatI WGTACW 1 cut(s) 400
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 2 cut(s) 227, 424
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 2 cut(s) 245, 248
TspDTI ATGAA 4 cut(s) 35, 384, 395, 423
Van91I CCANNNNNTGG 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 78
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.