RchiOBHm_Chr2g0136801

C-5 cytosine-specific DNA methylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000338
Physical Location & Seq
Forward (+)
54090270 .. 54091599
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50758

Sequence Viewer

Length: 645 bp
ATGAAGCTTCTCGAGGGCTGTGATGGCATTCCACCAGAAAGAGTCCAGCGGGCTGTTATACATGAATGCCGTAAGTGGAATCTATTGTGGGTTGGAAGAAATAGGGTTGCCCCACTTGAGCCTGATGAAGTGGAAATGCTCATGGGGTTTCCAAAGGATCACACAAGGGGAATGAGCCGCACTGATAGATACAAATCGCTTGGCAATGCATTTCAGATTCACACTGTGGCATACCACTTCTCAGTCTTGCGAGACAAGTTTCCAAATGGTATAAATGTCCTCTCTCTATTCTCCGGGATAGGTGGAGCAGAAGTAGCCCTCCATCGTCTTGGAATCCATATGAAGAATGTGGTGTCCGTAGAGATATCAGAAGTGAACAGAAACGTTGTGAGGTGTTGGTGGGAGCAAACAAACCAGACGGGAAATTTGATTCACCTTGCTGATGTAAAGGAGCTAGATGCTAACAGATTGGAACAGTTGATGTTTTCATTCGGTGGCTTTGATCTTGTAGTGGGTGGGAGCCCCTGCAATAATCTAACAGGCAGCAATAGATATCATCGAGATGGACTCGAGGGCAAAGAATCTTCACTTTTCTATCACTACTTTCGAATTCTGGACTTGGTCAAGTCTATTATGGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

214

Amino Acids

24.28

Weight (kDa)

7.76

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_methylase PF00145 92 - 206 8.1e-10 C-5 cytosine-specific DNA methylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 178
AclI AACGTT 1 cut(s) 384
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 2 cut(s) 424, 609
AdeI CACNNNGTG 1 cut(s) 226
AluBI AGCT 2 cut(s) 7, 454
AluI AGCT 2 cut(s) 7, 454
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 2 cut(s) 11, 569
ApeKI GCWGC 1 cut(s) 543
ApoI RAATTY 2 cut(s) 424, 609
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 425
AsuII TTCGAA 1 cut(s) 607
AvaI CYCGRG 2 cut(s) 11, 569
BanII GRGCYC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 555
BccI CCATC 3 cut(s) 17, 330, 557
BceAI ACGGC 1 cut(s) 54
BcnI CCSGG 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 455
BisI GCNGC 2 cut(s) 178, 544
BlsI GCNGC 2 cut(s) 179, 545
Bme1390I CCNGG 1 cut(s) 295
BmeT110I CYCGRG 2 cut(s) 11, 569
BmiI GGNNCC 1 cut(s) 521
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 448
BplI GAGNNNNNCTC 2 cut(s) 552, 584
Bpu14I TTCGAA 1 cut(s) 607
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bse3DI GCAATG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 193
BseJI GATNNNNATC 1 cut(s) 193
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 555
BsiHKCI CYCGRG 2 cut(s) 11, 569
BsiSI CCGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 246
BsmI GAATGC 2 cut(s) 27, 71
BsoBI CYCGRG 2 cut(s) 11, 569
Bsp119I TTCGAA 1 cut(s) 607
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 2 cut(s) 157, 502
BspACI CCGC 2 cut(s) 49, 178
BspCNI CTCAG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 521
BspPI GGATC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 211
BssMI GATC 2 cut(s) 157, 502
Bst4CI ACNGT 2 cut(s) 226, 477
BstBI TTCGAA 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 241
BstKTI GATC 2 cut(s) 160, 505
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 2 cut(s) 157, 502
BstMWI GCNNNNNNNGC 2 cut(s) 24, 314
BstSCI CCNGG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 329
BtsIMutI CAGTG 2 cut(s) 180, 222
Cac8I GCNNGC 1 cut(s) 51
CviAII CATG 2 cut(s) 62, 142
CviJI RGCY 9 cut(s) 7, 18, 53, 121, 177, 317, 454, 498, 522
CviKI_1 RGCY 9 cut(s) 7, 18, 53, 121, 177, 317, 454, 498, 522
DdeI CTNAG 1 cut(s) 241
DpnI GATC 2 cut(s) 159, 504
DpnII GATC 2 cut(s) 157, 502
DraIII CACNNNGTG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 524
Eco32I GATATC 2 cut(s) 366, 554
Eco88I CYCGRG 2 cut(s) 11, 569
EcoRI GAATTC 1 cut(s) 609
EcoRV GATATC 2 cut(s) 366, 554
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 524
FaeI CATG 2 cut(s) 65, 145
FaiI YATR 8 cut(s) 59, 63, 143, 232, 272, 339, 341, 635
FatI CATG 2 cut(s) 61, 141
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 178, 544
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 2 cut(s) 178, 544
FspBI CTAG 1 cut(s) 455
GluI GCNGC 2 cut(s) 178, 544
HapII CCGG 1 cut(s) 294
Hin1II CATG 2 cut(s) 65, 145
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 7 cut(s) 42, 79, 217, 333, 430, 567, 581
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 216, 370
Hpy188III TCNNGA 3 cut(s) 11, 560, 614
Hpy8I GTNNAC 1 cut(s) 376
HpyCH4III ACNGT 2 cut(s) 226, 477
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 2 cut(s) 209, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 314
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 2 cut(s) 65, 145
Kzo9I GATC 2 cut(s) 157, 502
LmnI GCTCC 4 cut(s) 305, 403, 451, 519
LpnPI CCDG 9 cut(s) 48, 59, 135, 307, 428, 525, 538, 599, 624
Lsp1109I GCAGC 1 cut(s) 555
LweI GCATC 1 cut(s) 448
MaeI CTAG 1 cut(s) 455
MaeII ACGT 1 cut(s) 384
MalI GATC 2 cut(s) 159, 504
MboI GATC 2 cut(s) 157, 502
MboII GAAGA 3 cut(s) 108, 355, 576
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 2 cut(s) 424, 609
MlyI GAGTC 2 cut(s) 51, 561
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 5 cut(s) 7, 290, 329, 384, 565
Mph1103I ATGCAT 1 cut(s) 211
MslI CAYNNNNRTG 1 cut(s) 561
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 295
Mva1269I GAATGC 2 cut(s) 27, 71
MwoI GCNNNNNNNGC 2 cut(s) 24, 314
NciI CCSGG 1 cut(s) 295
NdeI CATATG 1 cut(s) 339
NdeII GATC 2 cut(s) 157, 502
NlaIII CATG 2 cut(s) 65, 145
NlaIV GGNNCC 1 cut(s) 521
NsiI ATGCAT 1 cut(s) 211
NspV TTCGAA 1 cut(s) 607
PaeR7I CTCGAG 2 cut(s) 11, 569
PctI GAATGC 2 cut(s) 27, 71
PfeI GAWTC 5 cut(s) 79, 217, 333, 430, 581
PflFI GACNNNGTC 1 cut(s) 620
PfoI TCCNGGA 1 cut(s) 293
PkrI GCNGC 2 cut(s) 179, 545
PleI GAGTC 2 cut(s) 50, 561
PpsI GAGTC 2 cut(s) 50, 561
Psp1406I AACGTT 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 521
PspXI VCTCGAGB 1 cut(s) 569
PsyI GACNNNGTC 1 cut(s) 620
RseI CAYNNNNRTG 1 cut(s) 561
SatI GCNGC 2 cut(s) 178, 544
Sau3AI GATC 2 cut(s) 157, 502
SchI GAGTC 2 cut(s) 51, 561
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 1 cut(s) 524
SetI ASST 6 cut(s) 9, 304, 387, 395, 438, 456
SfaNI GCATC 1 cut(s) 448
Sfr274I CTCGAG 2 cut(s) 11, 569
SfuI TTCGAA 1 cut(s) 607
SlaI CTCGAG 2 cut(s) 11, 569
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 3 cut(s) 11, 116, 569
SmoI CTYRAG 3 cut(s) 11, 116, 569
Sse9I AATT 2 cut(s) 424, 609
SsiI CCGC 2 cut(s) 49, 178
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 2 cut(s) 226, 477
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 12, 559, 570, 607
TasI AATT 2 cut(s) 424, 609
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 5 cut(s) 79, 217, 333, 430, 581
TscAI CASTG 2 cut(s) 187, 229
TseI GCWGC 1 cut(s) 543
TspDTI ATGAA 5 cut(s) 17, 78, 141, 356, 477
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 2 cut(s) 187, 229
Tth111I GACNNNGTC 1 cut(s) 620
XapI RAATTY 2 cut(s) 424, 609
XhoI CTCGAG 2 cut(s) 11, 569
XspI CTAG 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.