RchiOBHm_Chr1g0328991

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000338
Physical Location & Seq
Reverse (-)
18451945 .. 18455648
3704 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55834

Sequence Viewer

Length: 609 bp
ATGTCCTTGGTTAAAATGGGGTATTCAATGGCTATAGAAAGATGCGGTATTGACTCGTCACTTGTTGATTTCACTGATTTCATATCAGCTGCTCAAATTTCAAAGGCAGAAGATGGCCATCTTCCCCTTGAAGAGATGAATCACGTACACGTGTGGAGTGAGTATCCTGAGAAGAGTAAGAGGAAACTTTGTGAATCTTCATTGCTGAAAAGGAAAAGGATTATCGGACATGGAAACCAGATCATAGGGGAAGATGCTGATGCAATTCATCTCCCAAATCCAATGGTTGGGTTTGGGACTCCAGATCTCTGTCAAATCTACCAAAATCTTCCAAAGGCAGCCGCAGGACCTCCTTATTTTTACTATGAGAATGTGGCATTGACACGTAAAGGAGTTTGGAGCACAATGTCCTGCTTTTTGTATGACATGAAGCCTGAGTTTGTTGATCCGAAGTATTTTTGTGCTGCTGCAAGAAAAAGGGGCTATGTTCACAATCTTCCAGTCAAAAACAGATTTCCTCTCGTTCCCCTTCCACCACAAACTATATTTGATGCATTTCCCATGACAAGTGGAATCTTGTTTGGGGAAAGAAAAAGTGGCCCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

202

Amino Acids

22.71

Weight (kDa)

8.22

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 287
AciI CCGC 2 cut(s) 45, 342
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 96
AcvI CACGTG 1 cut(s) 151
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 3 cut(s) 148, 150, 383
AgsI TTSAA 3 cut(s) 27, 102, 131
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw21I GWGCWC 1 cut(s) 404
AlwI GGATC 1 cut(s) 440
AoxI GGCC 2 cut(s) 115, 598
ApeKI GCWGC 4 cut(s) 89, 338, 464, 467
ApoI RAATTY 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 347, 599
AvaII GGWCC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 117
BbrPI CACGTG 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 404
BbvI GCAGC 4 cut(s) 76, 350, 451, 454
BccI CCATC 2 cut(s) 107, 126
BciVI GTATCC 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 33
BfuI GTATCC 1 cut(s) 174
BglII AGATCT 1 cut(s) 304
BisI GCNGC 5 cut(s) 90, 339, 342, 465, 468
BlsI GCNGC 5 cut(s) 91, 340, 343, 466, 469
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 2 cut(s) 347, 599
BmiI GGNNCC 1 cut(s) 601
BmsI GCATC 4 cut(s) 32, 244, 250, 541
BpmI CTGGAG 1 cut(s) 285
BsaAI YACGTR 3 cut(s) 145, 151, 386
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 6
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 2 cut(s) 159, 426
BseNI ACTGG 1 cut(s) 500
BseXI GCAGC 4 cut(s) 76, 350, 451, 454
BshFI GGCC 2 cut(s) 117, 600
BsiHKAI GWGCWC 1 cut(s) 404
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 2 cut(s) 117, 600
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 240, 304, 445
BspACI CCGC 2 cut(s) 45, 342
BspANI GGCC 2 cut(s) 117, 600
BspCNI CTCAG 2 cut(s) 160, 427
BspLI GGNNCC 1 cut(s) 601
BspPI GGATC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 200
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 240, 304, 445
BssT1I CCWWGG 1 cut(s) 6
Bst6I CTCTTC 2 cut(s) 126, 167
BstBAI YACGTR 3 cut(s) 145, 151, 386
BstDEI CTNAG 2 cut(s) 168, 435
BstKTI GATC 3 cut(s) 243, 307, 448
BstMBI GATC 3 cut(s) 240, 304, 445
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 4 cut(s) 76, 350, 451, 454
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuI GTATCC 1 cut(s) 174
BsuRI GGCC 2 cut(s) 117, 600
BtsIMutI CAGTG 1 cut(s) 72
Cfr13I GGNCC 2 cut(s) 347, 599
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 230, 427, 562
CviJI RGCY 7 cut(s) 32, 89, 117, 341, 433, 483, 600
CviKI_1 RGCY 7 cut(s) 32, 89, 117, 341, 433, 483, 600
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 2 cut(s) 168, 435
DpnI GATC 3 cut(s) 242, 306, 447
DpnII GATC 3 cut(s) 240, 304, 445
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 126, 167
EarI CTCTTC 2 cut(s) 126, 167
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 347
Eco72I CACGTG 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 3 cut(s) 233, 430, 565
FaqI GGGAC 1 cut(s) 310
FatI CATG 3 cut(s) 229, 426, 561
Fnu4HI GCNGC 5 cut(s) 90, 339, 342, 465, 468
Fsp4HI GCNGC 5 cut(s) 90, 339, 342, 465, 468
GluI GCNGC 5 cut(s) 90, 339, 342, 465, 468
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 2 cut(s) 117, 600
Hin1II CATG 3 cut(s) 233, 430, 565
HinfI GANTC 5 cut(s) 53, 139, 194, 298, 573
Hpy166II GTNNAC 2 cut(s) 148, 490
Hpy188I TCNGA 2 cut(s) 227, 450
Hpy188III TCNNGA 2 cut(s) 167, 302
Hpy8I GTNNAC 2 cut(s) 148, 490
HpyAV CCTTC 1 cut(s) 539
HpyCH4IV ACGT 3 cut(s) 144, 150, 385
HpyCH4V TGCA 3 cut(s) 263, 470, 554
HpyF3I CTNAG 2 cut(s) 168, 435
HpySE526I ACGT 3 cut(s) 144, 150, 385
Hsp92II CATG 3 cut(s) 233, 430, 565
Kzo9I GATC 3 cut(s) 240, 304, 445
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 7 cut(s) 180, 251, 315, 330, 424, 447, 513
Lsp1109I GCAGC 4 cut(s) 76, 350, 451, 454
LweI GCATC 4 cut(s) 32, 244, 250, 541
MaeII ACGT 3 cut(s) 144, 150, 385
MaeIII GTNAC 1 cut(s) 57
MalI GATC 3 cut(s) 242, 306, 447
MboI GATC 3 cut(s) 240, 304, 445
MboII GAAGA 8 cut(s) 113, 122, 143, 184, 189, 263, 320, 488
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 404
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 2 cut(s) 96, 264
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 2 cut(s) 47, 292
MnlI CCTC 3 cut(s) 174, 360, 528
Mox20I TGGCCA 1 cut(s) 117
Mph1103I ATGCAT 1 cut(s) 556
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 89
NdeII GATC 3 cut(s) 240, 304, 445
NlaIII CATG 3 cut(s) 233, 430, 565
NlaIV GGNNCC 1 cut(s) 601
NmuCI GTSAC 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 556
PfeI GAWTC 3 cut(s) 139, 194, 573
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 5 cut(s) 91, 340, 343, 466, 469
PleI GAGTC 2 cut(s) 47, 292
PmaCI CACGTG 1 cut(s) 151
PmlI CACGTG 1 cut(s) 151
PpsI GAGTC 2 cut(s) 47, 292
Ppu21I YACGTR 3 cut(s) 145, 151, 386
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
PspCI CACGTG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 2 cut(s) 347, 599
PspPPI RGGWCCY 1 cut(s) 347
PsuI RGATCY 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 5 cut(s) 90, 339, 342, 465, 468
Sau3AI GATC 3 cut(s) 240, 304, 445
Sau96I GGNCC 2 cut(s) 347, 599
SchI GAGTC 2 cut(s) 47, 292
SduI GDGCHC 1 cut(s) 404
SetI ASST 5 cut(s) 91, 147, 153, 352, 388
SfaNI GCATC 4 cut(s) 32, 244, 250, 541
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 347
Sse9I AATT 2 cut(s) 96, 264
SsiI CCGC 2 cut(s) 45, 342
StyI CCWWGG 1 cut(s) 6
TaiI ACGT 3 cut(s) 147, 153, 388
TasI AATT 2 cut(s) 96, 264
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 3 cut(s) 139, 194, 573
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 4 cut(s) 89, 338, 464, 467
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 5 cut(s) 70, 152, 189, 257, 443
TspRI CASTG 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 96
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.