Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000338

Physical Location & Seq

Genomic Coordinates Forward (+)

60340622 .. 60341010

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCATCAATGTCCTCTCTCTTCTCTGGGATTAGTGGTGCAGACATAGCTCATTATTGGCTTGGTATCCCGATGAAGAATGTTGTGTCGTCAGTGGAGATTTCAGTGACAAACCCGAAGGGGAACTTGTATCACCTTGCTGATGTGCAAGAGTTGAATGTTGACTGCTTAGAGCATTATATGAGTTCCTTTGGCGAGTTTGATCTGGTGATTGGTGGCAGTCCATGTAACAATCTTGCGGGTAGCAACAGACACCTTTGGGATGGGCTTGAGGGAAAAGAGTCTTCTCTTTTTTATGACTATTTTCGTATATTGGATTTGGTCAAGGGTATTATGGCAAGATACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

117

Amino Acids

12.84

Weight (kDa)

4.93

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14620
fragaria_vesca	FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica	MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica	Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis	pycom111g02390 pycom17g02950
rosa_chinensis	RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata	RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora	Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa	Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha	Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana	Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	125, 220
BbsI	GAAGAC	1 cut(s)	276
BccI	CCATC	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	77
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	239
BssMI	GATC	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	99, 111
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	3 cut(s)	50, 61, 268
CviKI_1	RGCY	3 cut(s)	50, 61, 268
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
FaeI	CATG	1 cut(s)	228
FaiI	YATR	7 cut(s)	47, 180, 182, 226, 297, 311, 335
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	224
FauI	CCCGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	2 cut(s)	125, 220
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	41, 148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	2 cut(s)	12, 191
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	106, 227
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	13, 88, 276
MfeI	CAATTG	1 cut(s)	346
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	2 cut(s)	25, 265
MunI	CAATTG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Sau3AI	GATC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	290
SetI	ASST	3 cut(s)	52, 138, 258
SfaNI	GCATC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	1 cut(s)	239
TasI	AATT	1 cut(s)	346
TscAI	CASTG	2 cut(s)	99, 111
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	99, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.