RLG00000030370

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000338
Physical Location & Seq
Forward (+)
60197538 .. 60198682
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030370

Sequence Viewer

Length: 657 bp
ATGAAGGCTCTCAAAGACTATGACGAAGATGAAATTCCACCTGAAAGTGTCCGTGGCTATGTTCTTTATGAAAGCCGCAAGTGGAATCTTGTTTGGGTAGGAAAGAAAAAGGTGGCCCCACTGGAGCCTGATCAAGTGGAAATGCTTTTGGGGTTCCCATGGGACCTGACAAGGTTGTCTCGTCATTTTGAAATTGCATTTGCTTATGGTTCATTGGCATTTAGATATTCTGCTATTAAATTCCCTCATTCTTTTGAAAGATCGATTTCCCAATGGCATCAATGTCTCTCTCTCTTCTCTGGGATTAGCGGTGCAGAGATAGCTCTTTACCTGCTTGGTATCCCGATAAAGAATATTGTGTCAGTGGAGATTTCAGAGGTGAGCAGAAATGTTGTGAGGTGTTGGTGGGAGCAGACAAACCAGAGAGGGAACTTGTATCACCTTGCTGATGTGCAAGAGTTGAATGCTGACCGCTTAGAGCATTATATCAGTTCCTTTGGTGGGTTTGATCTAGAGATTTGTGGCAGTCCATGTAACAATCTTGCGGGTAGCAACAGGCACCATCGGGATGGGCTTGAGGGTAAAGAAGCTTCACTTTTTTATGACTATTTTCATATATTGGATTTGGTCAAGGGTATTATGGCAAGATACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

219

Amino Acids

25.14

Weight (kDa)

5.9

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 558
AciI CCGC 4 cut(s) 76, 309, 472, 545
AcsI RAATTY 2 cut(s) 33, 239
AfiI CCNNNNNNNGG 1 cut(s) 501
AgsI TTSAA 3 cut(s) 191, 257, 463
AluBI AGCT 2 cut(s) 323, 590
AluI AGCT 2 cut(s) 323, 590
Alw26I GTCTC 2 cut(s) 183, 290
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 2 cut(s) 33, 239
AspS9I GGNCC 2 cut(s) 115, 163
AsuHPI GGTGA 2 cut(s) 391, 431
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 558
BarI GAAGNNNNNNTAC 2 cut(s) 574, 606
BccI CCATC 2 cut(s) 563, 570
BciVI GTATCC 1 cut(s) 350
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 183, 290
BfaI CTAG 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 339
BfuI GTATCC 1 cut(s) 350
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 115, 163
BmiI GGNNCC 5 cut(s) 117, 126, 155, 164, 560
BmsI GCATC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 596
Bsa29I ATCGAT 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 52, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 126
BseCI ATCGAT 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 52, 158
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 558
BshVI ATCGAT 1 cut(s) 263
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 501
BsmAI GTCTC 2 cut(s) 183, 290
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 3 cut(s) 130, 260, 508
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 4 cut(s) 76, 309, 472, 545
BspANI GGCC 1 cut(s) 116
BspDI ATCGAT 1 cut(s) 263
BspLI GGNNCC 5 cut(s) 117, 126, 155, 164, 560
BspMI ACCTGC 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 558
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 52, 158
BssMI GATC 3 cut(s) 130, 260, 508
BssT1I CCWWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 475
BstDSI CCRYGG 2 cut(s) 52, 158
BstF5I GGATG 1 cut(s) 574
BstKTI GATC 3 cut(s) 133, 263, 511
BstMAI GTCTC 2 cut(s) 183, 290
BstMBI GATC 3 cut(s) 130, 260, 508
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstXI CCANNNNNNTGG 1 cut(s) 569
Bsu15I ATCGAT 1 cut(s) 263
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 263
BtgI CCRYGG 2 cut(s) 52, 158
BtsCI GGATG 1 cut(s) 574
BtsIMutI CAGTG 2 cut(s) 119, 369
BveI ACCTGC 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 115, 163
ClaI ATCGAT 1 cut(s) 263
CviAII CATG 2 cut(s) 159, 531
CviJI RGCY 8 cut(s) 8, 57, 75, 116, 127, 323, 574, 590
CviKI_1 RGCY 8 cut(s) 8, 57, 75, 116, 127, 323, 574, 590
DdeI CTNAG 1 cut(s) 475
DpnI GATC 3 cut(s) 132, 262, 510
DpnII GATC 3 cut(s) 130, 260, 508
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 162, 534
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 176
FatI CATG 2 cut(s) 158, 530
FauI CCCGC 1 cut(s) 538
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 581
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 1 cut(s) 512
GluI GCNGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 2 cut(s) 162, 534
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 1 cut(s) 85
HphI GGTGA 2 cut(s) 391, 431
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 3 cut(s) 343, 512, 566
HpyCH4V TGCA 3 cut(s) 197, 314, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 475
Hsp92II CATG 2 cut(s) 162, 534
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 130, 260, 508
LmnI GCTCC 2 cut(s) 124, 409
LpnPI CCDG 8 cut(s) 54, 107, 141, 179, 285, 344, 434, 541
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 512
MaeIII GTNAC 1 cut(s) 533
MalI GATC 3 cut(s) 132, 262, 510
MboI GATC 3 cut(s) 130, 260, 508
MboII GAAGA 2 cut(s) 38, 286
MfeI CAATTG 1 cut(s) 652
MluCI AATT 4 cut(s) 33, 192, 239, 652
MnlI CCTC 5 cut(s) 255, 370, 390, 419, 571
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 567
MunI CAATTG 1 cut(s) 652
Mva1269I GAATGC 1 cut(s) 469
MwoI GCNNNNNNNGC 1 cut(s) 320
NcoI CCATGG 1 cut(s) 158
NdeII GATC 3 cut(s) 130, 260, 508
NlaIII CATG 2 cut(s) 162, 534
NlaIV GGNNCC 5 cut(s) 117, 126, 155, 164, 560
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 77
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
PspN4I GGNNCC 5 cut(s) 117, 126, 155, 164, 560
PspPI GGNCC 2 cut(s) 115, 163
PspPPI RGGWCCY 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 3 cut(s) 130, 260, 508
Sau96I GGNCC 2 cut(s) 115, 163
SfaNI GCATC 1 cut(s) 286
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 4 cut(s) 33, 192, 239, 652
SsiI CCGC 4 cut(s) 76, 309, 472, 545
SspI AATATT 1 cut(s) 355
SspMI CTAG 1 cut(s) 512
StyI CCWWGG 1 cut(s) 158
TaqI TCGA 1 cut(s) 263
TasI AATT 4 cut(s) 33, 192, 239, 652
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 126, 369
TspDTI ATGAA 5 cut(s) 17, 45, 84, 201, 602
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 2 cut(s) 126, 369
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 2 cut(s) 33, 239
XbaI TCTAGA 1 cut(s) 511
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.