RchiOBHm_Chr1g0321601

DNA (cytosine-5)-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
9100117 .. 9101752
1636 bp
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UTR
Exon/CDS
Intron
PRQ55164

Sequence Viewer

Length: 408 bp
ATGATCTTGGCTTATCACCTGTCAGTTTTGAAAGATCGATTTCCCGATGGCATCAATGTCTCTCTCTTCTCTGGGATTGGCAGTGCAGAGATAGCTCTTTACCGGCTTGGTATCCCGATGAAGAATATTGTGTCAGTGGAGATTTCAGAGGTGGGGAGAAATGTTGTGAGGTGTTGGTGGGAGCAGACAAACCAGAGGGGGAACTTGTATCACCTTGCTGATGTGGAAGAGTTGAATGTCAGTTCCTTTGGTGGGTTTGATCTAGTGATTTGTGGCAGTCCATGTAACAATCTTGCGGGTAGCAACAGGCACCATCGGGATGGGCTTGAGGGTAAAGAATCTTCCCTTTTTTATGACCCTTTTTGTATATTGGATTTGGTCAAGGGTATTATGGTAAGATACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.09

Weight (kDa)

5.75

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_methylase PF00145 20 - 123 1.6e-06 C-5 cytosine-specific DNA methylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 309
AciI CCGC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 2 cut(s) 31, 235
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 8, 203
BanI GGYRCC 1 cut(s) 309
BarI GAAGNNNNNNTAC 2 cut(s) 325, 357
BccI CCATC 3 cut(s) 41, 314, 321
BciVI GTATCC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 263
BfuI GTATCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 311
BmsI GCATC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 37
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 309
BshVI ATCGAT 1 cut(s) 37
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 3, 34, 259
BspACI CCGC 1 cut(s) 296
BspDI ATCGAT 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 102
BssMI GATC 3 cut(s) 3, 34, 259
Bst6I CTCTTC 2 cut(s) 71, 222
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 3 cut(s) 6, 37, 262
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 3 cut(s) 3, 34, 259
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstXI CCANNNNNNTGG 1 cut(s) 320
Bsu15I ATCGAT 1 cut(s) 37
BsuI GTATCC 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 37
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 88, 141
Cfr10I RCCGGY 1 cut(s) 102
ClaI ATCGAT 1 cut(s) 37
CviAII CATG 1 cut(s) 282
CviJI RGCY 4 cut(s) 11, 95, 106, 325
CviKI_1 RGCY 4 cut(s) 11, 95, 106, 325
DpnI GATC 3 cut(s) 5, 36, 261
DpnII GATC 3 cut(s) 3, 34, 259
Eam1104I CTCTTC 2 cut(s) 71, 222
EarI CTCTTC 2 cut(s) 71, 222
FaeI CATG 1 cut(s) 285
FaiI YATR 4 cut(s) 283, 354, 368, 392
FatI CATG 1 cut(s) 281
FauI CCCGC 1 cut(s) 289
FokI GGATG 1 cut(s) 332
FspBI CTAG 1 cut(s) 263
HapII CCGG 1 cut(s) 103
Hin1II CATG 1 cut(s) 285
HinfI GANTC 1 cut(s) 338
HpaII CCGG 1 cut(s) 103
HphI GGTGA 2 cut(s) 8, 203
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 44, 115, 317
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Hsp92II CATG 1 cut(s) 285
Kzo9I GATC 3 cut(s) 3, 34, 259
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 32, 57, 116, 206, 292
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 284
MalI GATC 3 cut(s) 5, 36, 261
MboI GATC 3 cut(s) 3, 34, 259
MboII GAAGA 4 cut(s) 58, 133, 239, 333
MfeI CAATTG 1 cut(s) 403
MluCI AATT 1 cut(s) 403
MnlI CCTC 4 cut(s) 142, 162, 189, 322
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 403
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 3 cut(s) 3, 34, 259
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 318
Sau3AI GATC 3 cut(s) 3, 34, 259
SetI ASST 5 cut(s) 21, 97, 153, 173, 216
SfaNI GCATC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 403
SsiI CCGC 1 cut(s) 296
SspI AATATT 1 cut(s) 127
SspMI CTAG 1 cut(s) 263
TaqI TCGA 1 cut(s) 37
TasI AATT 1 cut(s) 403
TfiI GAWTC 1 cut(s) 338
TscAI CASTG 2 cut(s) 88, 141
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 2 cut(s) 88, 141
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.