Rroxscaffold_4G00326990

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000338
Physical Location & Seq
Forward (+)
59356044 .. 59357774
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326990.1

Sequence Viewer

Length: 639 bp
ATGATTGGGTTTGGAAATCCAGCTGATCTGTGTCAAATCCACAGAAGTCTTCCAGAGGCAGCCACAGGACCTCCTTATTTTTACTATGAGAATGTGGCATTGACTCCTAAAGGAGTTTGGAGCACAACATCCCGCTTTTTGTATGACGTGAAGCCTGAGTTTATTGATTTGAAGTATTTTTGTGCTGCTGCAAGAAAAAGGGGCTATGTTCACAATCTTCCAATCAAAAACAGATTTACTCTCGTTCCCCTTCCACCACAAACTATATTTGGTGCATTTCCCATGACAAGGAGGTGGTGGCCTACTTGGGATGATCGGACAAAGCTAAATTGCTTACAGACTTGCATTGCTAGTGCAACAATTACTGAGAGGATCATGAAGGCTCTTAAAGACTATGACGAAGATGAAATCCCACCTGAAAGTGTCCATCGCTATGTTCTTTATGAATGCCGCAAGTGGAATCTAGTTTGGGTAGGAAAGAAAAAAGTGGCCCCACTTGAACCTGATGAAGTAGAAATGTTTTTGGGGTTCCCAAGGGACCACACAAGTCACTGGGATATTCATTCCAGTTTTGAAAGATCGATTTCCCAATGGCATCAATGTCCTCTCTCTCCTCTGGGATTGGTGGTGCAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

212

Amino Acids

24.72

Weight (kDa)

8.48

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 133, 451
AclWI GGATC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 3 cut(s) 172, 500, 575
AjiI CACGTC 1 cut(s) 148
AluBI AGCT 2 cut(s) 23, 325
AluI AGCT 2 cut(s) 23, 325
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 1 cut(s) 380
AoxI GGCC 2 cut(s) 299, 489
ApeKI GCWGC 3 cut(s) 59, 185, 188
AspS9I GGNCC 3 cut(s) 68, 490, 538
AvaII GGWCC 2 cut(s) 68, 538
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 71, 172, 175
BccI CCATC 1 cut(s) 435
BfaI CTAG 2 cut(s) 351, 464
BisI GCNGC 4 cut(s) 60, 186, 189, 451
BlsI GCNGC 4 cut(s) 61, 187, 190, 452
Bme18I GGWCC 2 cut(s) 68, 538
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 68, 490, 538
BmiI GGNNCC 3 cut(s) 492, 530, 539
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 1 cut(s) 604
BmuI ACTGGG 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 41
Bsa29I ATCGAT 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 533
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 2 cut(s) 557, 567
Bse3DI GCAATG 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 533
BseGI GGATG 2 cut(s) 128, 316
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 147, 357
BseNI ACTGG 2 cut(s) 557, 567
BseRI GAGGAG 1 cut(s) 603
BseXI GCAGC 3 cut(s) 71, 172, 175
BshFI GGCC 2 cut(s) 301, 491
BshVI ATCGAT 1 cut(s) 581
BsiHKAI GWGCWC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 2 cut(s) 301, 491
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 25, 313, 372, 578
BspACI CCGC 2 cut(s) 133, 451
BspANI GGCC 2 cut(s) 301, 491
BspCNI CTCAG 2 cut(s) 148, 358
BspDI ATCGAT 1 cut(s) 581
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 492, 530, 539
BspPI GGATC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 2 cut(s) 557, 567
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 4 cut(s) 25, 313, 372, 578
BssT1I CCWWGG 1 cut(s) 533
BstDEI CTNAG 2 cut(s) 156, 366
BstF5I GGATG 2 cut(s) 128, 316
BstKTI GATC 4 cut(s) 28, 316, 375, 581
BstMBI GATC 4 cut(s) 25, 313, 372, 578
BstV1I GCAGC 3 cut(s) 71, 172, 175
BstV2I GAAGAC 1 cut(s) 41
Bsu15I ATCGAT 1 cut(s) 581
BsuRI GGCC 2 cut(s) 301, 491
BsuTUI ATCGAT 1 cut(s) 581
BtgZI GCGATG 1 cut(s) 413
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 128, 316
BtsIMutI CAGTG 1 cut(s) 550
CciI TCATGA 1 cut(s) 375
Cfr13I GGNCC 3 cut(s) 68, 490, 538
ClaI ATCGAT 1 cut(s) 581
CviAII CATG 2 cut(s) 283, 376
CviJI RGCY 8 cut(s) 23, 62, 154, 204, 301, 325, 383, 491
CviKI_1 RGCY 8 cut(s) 23, 62, 154, 204, 301, 325, 383, 491
DdeI CTNAG 2 cut(s) 156, 366
DpnI GATC 4 cut(s) 27, 315, 374, 580
DpnII GATC 4 cut(s) 25, 313, 372, 578
Eco130I CCWWGG 1 cut(s) 533
Eco47I GGWCC 2 cut(s) 68, 538
EcoO109I RGGNCCY 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 2 cut(s) 286, 379
FaiI YATR 9 cut(s) 87, 144, 207, 266, 284, 377, 396, 435, 444
FaqI GGGAC 1 cut(s) 551
FatI CATG 2 cut(s) 282, 375
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 4 cut(s) 60, 186, 189, 451
FokI GGATG 2 cut(s) 115, 323
Fsp4HI GCNGC 4 cut(s) 60, 186, 189, 451
FspBI CTAG 2 cut(s) 351, 464
GluI GCNGC 4 cut(s) 60, 186, 189, 451
HaeIII GGCC 2 cut(s) 301, 491
Hin1II CATG 2 cut(s) 286, 379
HinfI GANTC 2 cut(s) 103, 460
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 2 cut(s) 53, 376
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 260, 373
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 5 cut(s) 191, 275, 345, 356, 631
HpyF3I CTNAG 2 cut(s) 156, 366
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 286, 379
Kzo9I GATC 4 cut(s) 25, 313, 372, 578
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 9 cut(s) 33, 51, 66, 168, 429, 516, 538, 580, 602
Lsp1109I GCAGC 3 cut(s) 71, 172, 175
LweI GCATC 1 cut(s) 604
MaeI CTAG 2 cut(s) 351, 464
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 548
MalI GATC 4 cut(s) 27, 315, 374, 580
MboI GATC 4 cut(s) 25, 313, 372, 578
MboII GAAGA 3 cut(s) 41, 209, 413
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 328, 360
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 6 cut(s) 49, 81, 285, 363, 615, 624
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 452
NdeII GATC 4 cut(s) 25, 313, 372, 578
NlaIII CATG 2 cut(s) 286, 379
NlaIV GGNNCC 3 cut(s) 492, 530, 539
NmuCI GTSAC 1 cut(s) 548
PagI TCATGA 1 cut(s) 375
PctI GAATGC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 460
PkrI GCNGC 4 cut(s) 61, 187, 190, 452
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
PspN4I GGNNCC 3 cut(s) 492, 530, 539
PspPI GGNCC 3 cut(s) 68, 490, 538
PspPPI RGGWCCY 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 4 cut(s) 60, 186, 189, 451
Sau3AI GATC 4 cut(s) 25, 313, 372, 578
Sau96I GGNCC 3 cut(s) 68, 490, 538
SchI GAGTC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 125
SetI ASST 7 cut(s) 25, 73, 150, 296, 327, 418, 505
SfaNI GCATC 1 cut(s) 604
SinI GGWCC 2 cut(s) 68, 538
SmiMI CAYNNNNRTG 1 cut(s) 432
Sse9I AATT 2 cut(s) 328, 360
SsiI CCGC 2 cut(s) 133, 451
SspMI CTAG 2 cut(s) 351, 464
StyI CCWWGG 1 cut(s) 533
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 581
TasI AATT 2 cut(s) 328, 360
TauI GCSGC 1 cut(s) 453
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 557
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 3 cut(s) 59, 185, 188
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 5 cut(s) 392, 420, 459, 522, 551
TspRI CASTG 1 cut(s) 557
VpaK11BI GGWCC 2 cut(s) 68, 538
XspI CTAG 2 cut(s) 351, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.