Rmu_sc0005949.1_g000027

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005949.1
OG0000338
Physical Location & Seq
Reverse (-)
138575 .. 139311
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005949.1_g000027.1.cds

Sequence Viewer

Length: 450 bp
atggcggggattagaatcatggtcataggggaagatgatgatgttcttcatctcccaaatccagtaattggttttgggatcccatctaatctttgtcaattccacaggagtcttccagaggcaaccacttgcctcaggacttccttgaaggcttctgaggaatatgatgcagatgggattccccagaaagagtcccaatcgtatgttctttatgaatgccgcaagtggaaccttgtctgggtagggaaggctgcctcacttgaggctgatgaagtagaaatgcttttggccatgaagggaataagcaggactaatagatacaagtcactcaggaattctttccagaatgatacagtggcttatcaccactccattttgaaagagtggtttccaatgacattgatgtcctctcttttttctctgggattggtcattggtgctaagtggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

149

Amino Acids

16.84

Weight (kDa)

6.07

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 403
AccB7I CCANNNNNTGG 1 cut(s) 68
AciI CCGC 2 cut(s) 5, 220
AclWI GGATC 2 cut(s) 73, 86
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 68, 238
AgsI TTSAA 2 cut(s) 148, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AlwI GGATC 2 cut(s) 73, 86
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 334
Asp700I GAANNNNTTC 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 356
AxyI CCTNAGG 1 cut(s) 134
BalI TGGCCA 1 cut(s) 290
BamHI GGATCC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 91, 167
BisI GCNGC 2 cut(s) 220, 252
BlsI GCNGC 2 cut(s) 221, 253
BmiI GGNNCC 2 cut(s) 80, 230
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 238
Bse1I ACTGG 1 cut(s) 62
Bse21I CCTNAGG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 14
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 68, 238
BseMII CTCAG 3 cut(s) 147, 148, 343
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 290
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 68, 238
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 2 cut(s) 5, 220
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 3 cut(s) 147, 148, 342
BspLI GGNNCC 2 cut(s) 80, 230
BspPI GGATC 2 cut(s) 73, 86
BsrI ACTGG 1 cut(s) 62
BssMI GATC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 355
BstDEI CTNAG 4 cut(s) 134, 156, 329, 441
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 360
CviAII CATG 2 cut(s) 19, 292
CviJI RGCY 5 cut(s) 152, 251, 266, 290, 359
CviKI_1 RGCY 5 cut(s) 152, 251, 266, 290, 359
DdeI CTNAG 4 cut(s) 134, 156, 329, 441
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
DrdI GACNNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 334
FaeI CATG 2 cut(s) 22, 295
FaiI YATR 6 cut(s) 20, 26, 165, 204, 213, 293
FaqI GGGAC 1 cut(s) 178
FatI CATG 2 cut(s) 18, 291
Fnu4HI GCNGC 2 cut(s) 220, 252
Fsp4HI GCNGC 2 cut(s) 220, 252
GluI GCNGC 2 cut(s) 220, 252
HaeIII GGCC 1 cut(s) 290
Hin1II CATG 2 cut(s) 22, 295
HinfI GANTC 4 cut(s) 15, 109, 178, 191
HphI GGTGA 1 cut(s) 356
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 4 cut(s) 116, 136, 331, 343
HpyAV CCTTC 3 cut(s) 142, 241, 289
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 1 cut(s) 170
HpyF3I CTNAG 4 cut(s) 134, 156, 329, 441
Hsp92II CATG 2 cut(s) 22, 295
Kzo9I GATC 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 324
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 3 cut(s) 38, 44, 104
MflI RGATCY 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 3 cut(s) 66, 98, 334
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 118, 200
MnlI CCTC 6 cut(s) 112, 143, 151, 256, 265, 418
Mox20I TGGCCA 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 338
MscI TGGCCA 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 221
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 22, 295
NlaIV GGNNCC 2 cut(s) 80, 230
NmuCI GTSAC 1 cut(s) 324
PctI GAATGC 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 15, 178
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 2 cut(s) 221, 253
PleI GAGTC 2 cut(s) 117, 199
PpsI GAGTC 2 cut(s) 117, 199
PspN4I GGNNCC 2 cut(s) 80, 230
PsuI RGATCY 1 cut(s) 78
SatI GCNGC 2 cut(s) 220, 252
Sau3AI GATC 1 cut(s) 78
SchI GAGTC 2 cut(s) 118, 200
SetI ASST 1 cut(s) 234
SfaNI GCATC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 3 cut(s) 66, 98, 334
SsiI CCGC 2 cut(s) 5, 220
TaaI ACNGT 1 cut(s) 355
TasI AATT 3 cut(s) 66, 98, 334
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 2 cut(s) 15, 178
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 4 cut(s) 38, 228, 285, 308
TspRI CASTG 1 cut(s) 360
Van91I CCANNNNNTGG 1 cut(s) 68
XapI RAATTY 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.