Rh1AG054000

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000338
Physical Location & Seq
Reverse (-)
8956550 .. 8958404
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG054000.1

Sequence Viewer

Length: 615 bp
ATGAAGACTCTTAAAGACTATGACAAAGATGAAACTCCACCTGAAAGTGTCCATCGCTATGTTCTTTATGAATGCCGCAGGTGGAATCTTGTTTGGGTAGGAAAGAAAAAGGTGGCCCCACTTGAGCCTGATGAAGTAGAAATGCTTTTGGGGTTCCCAAGGGACCACACAAGGGGAATAAGCAGGACAGATAGATATGACACTGGGAAATTCATTCCAGATTCAGAAAGTGGCTTTCCACCTGTCAGTTTTGAAATCGATTTCCCAATGGCATCAATGTCTTCTCGCTCCTCTGGGATTGTTGGTGCAGAAATAGCTCTTTCTCGGGTTGGTATCCCAATGAAGAATGTTGTGTCAGTGGAGATTTCAGATGTGAGTAGAAATGTTGTGAGGTGTTGGTGGGAGCAGACAAACCAGAGAGGGAACTTGTATCACCTTGCTGATGTGCAAGATATCAGTTCCATTGGCGGGTTTGATCCGGTGATTGGTGGTAGTCCATGTAACAATCTTGCGGGTAGCAACAGACACCATCAGGATGGGCTTCAGGATGTCAGCTCGGGAACTGGGACTTATGGTGGCTTCCTGACAGTTAGCCCTGGCGTTGATAACTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

204

Amino Acids

22.54

Weight (kDa)

5.36

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 69
AciI CCGC 3 cut(s) 76, 468, 512
AclWI GGATC 1 cut(s) 470
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 527
AfiI CCNNNNNNNGG 3 cut(s) 172, 468, 485
AgsI TTSAA 1 cut(s) 254
AjnI CCWGG 1 cut(s) 595
AluBI AGCT 2 cut(s) 317, 555
AluI AGCT 2 cut(s) 317, 555
AlwI GGATC 1 cut(s) 470
Ama87I CYCGRG 2 cut(s) 324, 556
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 115, 163
AsuHPI GGTGA 2 cut(s) 425, 493
AvaI CYCGRG 2 cut(s) 324, 556
AvaII GGWCC 1 cut(s) 163
BbsI GAAGAC 2 cut(s) 11, 273
BccI CCATC 3 cut(s) 60, 530, 537
BciT130I CCWGG 1 cut(s) 597
BciVI GTATCC 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 69
BfuI GTATCC 1 cut(s) 344
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 597
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 2 cut(s) 324, 556
BmgT120I GGNCC 2 cut(s) 115, 163
BmiI GGNNCC 3 cut(s) 117, 155, 164
BmrFI CCNGG 1 cut(s) 597
BmrI ACTGGG 2 cut(s) 213, 573
BmsI GCATC 1 cut(s) 281
BmuI ACTGGG 2 cut(s) 213, 573
BpiI GAAGAC 2 cut(s) 11, 273
BpuEI CTTGAG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 158, 595
BsaWI WCCGGW 1 cut(s) 478
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 468, 485
Bse1I ACTGG 2 cut(s) 208, 568
BseBI CCWGG 1 cut(s) 597
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 158, 595
BseGI GGATG 2 cut(s) 541, 553
BseLI CCNNNNNNNGG 3 cut(s) 172, 468, 485
BseNI ACTGG 2 cut(s) 208, 568
BseRI GAGGAG 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 258
BsiHKCI CYCGRG 2 cut(s) 324, 556
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 2 cut(s) 176, 580
BslI CCNNNNNNNGG 3 cut(s) 172, 468, 485
BsmFI GGGAC 2 cut(s) 176, 580
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 1 cut(s) 116
BsoBI CYCGRG 2 cut(s) 324, 556
Bsp143I GATC 1 cut(s) 475
BspACI CCGC 3 cut(s) 76, 468, 512
BspANI GGCC 1 cut(s) 116
BspDI ATCGAT 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 117, 155, 164
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 470
BsrI ACTGG 2 cut(s) 208, 568
BssECI CCNNGG 2 cut(s) 158, 595
BssMI GATC 1 cut(s) 475
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 1 cut(s) 589
BstF5I GGATG 2 cut(s) 541, 553
BstKTI GATC 1 cut(s) 478
BstMBI GATC 1 cut(s) 475
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 595
BstV2I GAAGAC 2 cut(s) 11, 273
BstXI CCANNNNNNTGG 1 cut(s) 536
Bsu15I ATCGAT 1 cut(s) 258
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 541, 553
BtsIMutI CAGTG 2 cut(s) 201, 363
BveI ACCTGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 115, 163
ClaI ATCGAT 1 cut(s) 258
CviAII CATG 1 cut(s) 498
CviJI RGCY 8 cut(s) 116, 127, 234, 317, 541, 555, 579, 594
CviKI_1 RGCY 8 cut(s) 116, 127, 234, 317, 541, 555, 579, 594
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 158
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 527
Eco88I CYCGRG 2 cut(s) 324, 556
EcoRII CCWGG 1 cut(s) 595
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 1 cut(s) 501
FaiI YATR 6 cut(s) 21, 60, 69, 198, 499, 573
FaqI GGGAC 2 cut(s) 176, 580
FatI CATG 1 cut(s) 497
FauI CCCGC 2 cut(s) 461, 505
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 2 cut(s) 548, 560
Fsp4HI GCNGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 479
Hin1II CATG 1 cut(s) 501
HinfI GANTC 3 cut(s) 7, 85, 221
HpaII CCGG 1 cut(s) 479
HphI GGTGA 2 cut(s) 425, 493
Hpy188I TCNGA 2 cut(s) 226, 370
Hpy188III TCNNGA 5 cut(s) 218, 533, 545, 558, 583
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4V TGCA 2 cut(s) 308, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
Hsp92II CATG 1 cut(s) 501
Kzo9I GATC 1 cut(s) 475
LmnI GCTCC 2 cut(s) 293, 403
LweI GCATC 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 500
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MboII GAAGA 3 cut(s) 16, 273, 355
MluCI AATT 1 cut(s) 209
MnlI CCTC 3 cut(s) 301, 384, 413
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 2 cut(s) 57, 534
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 1 cut(s) 597
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 475
NlaIII CATG 1 cut(s) 501
NlaIV GGNNCC 3 cut(s) 117, 155, 164
PaqCI CACCTGC 1 cut(s) 69
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 85, 221
PkrI GCNGC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 595
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 3 cut(s) 117, 155, 164
PspPI GGNCC 2 cut(s) 115, 163
RseI CAYNNNNRTG 2 cut(s) 57, 534
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 1 cut(s) 475
Sau96I GGNCC 2 cut(s) 115, 163
ScrFI CCNGG 1 cut(s) 597
SetI ASST 8 cut(s) 43, 83, 114, 244, 319, 395, 438, 557
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 57, 534
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 209
SsiI CCGC 3 cut(s) 76, 468, 512
StyD4I CCNGG 1 cut(s) 595
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 589
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 209
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 2 cut(s) 85, 221
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 208, 363
TspDTI ATGAA 6 cut(s) 17, 45, 84, 147, 202, 356
TspRI CASTG 2 cut(s) 208, 363
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.