Rh1CG053000

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000338
Physical Location & Seq
Reverse (-)
9781837 .. 9783820
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG053000.1

Sequence Viewer

Length: 648 bp
ATGAAGGCTCTTAAAGACTATGATGAAGATGAAATCCCACCTGAAAGTGTCCGTCGCTATGTTCTTTATGAATGCCGCAAGTGGAATCTTGTTTGGGTAGGAAAGAAAAAGGTGGCCCCACTTGAGCTTGATGAAGTAGAAATACTTTTGGGGTTCCCAAGGGACCACACAAGGGGAATAAGCAGGACAGATAGATATAAGTCACTGGGAAATTCATTTCAGATTGATACAGTGGCTTATCACCTGTCAGTTTTGAAAGATCGATTTCCCGATGGCATCAATGTCCTCTCTTTCTTCTCTGGGATTGGTGGTGCAGAGATAGCTCTTTACCGGCTTGGTATCCCGATGAAGAATGTTGTGTCAGTGGAGATTTCAGAGGTGAGCAGAAATGTTGTGAGGTGTTGGTGGGAGCAGACAAACCAGGGAGGGAACTTGTATCACCTTGCTGATGTGCAAGAGTTGAATGCTGACTACTTAGAGCATTATATCAGTTCCTTTGGCGGGTTTGATCTGGTGATTGGTGGCAGTCCATGTAACAATCTTGCGGGTAGCAACAGACACCATCGGGATGGGCTTAAGGATGTCAGCTCGGAAACTGGGACTTATGGTGACTTCCTGACAGTTGGCCCTAGCGTTGAGAACTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

215

Amino Acids

24.19

Weight (kDa)

5.38

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 76, 501, 545
AcsI RAATTY 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 172, 501
AflII CTTAAG 1 cut(s) 575
AgsI TTSAA 2 cut(s) 256, 463
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 3 cut(s) 127, 323, 588
AluI AGCT 3 cut(s) 127, 323, 588
AoxI GGCC 2 cut(s) 114, 625
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 115, 163, 626
AsuHPI GGTGA 5 cut(s) 233, 391, 431, 526, 620
AvaII GGWCC 1 cut(s) 163
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BccI CCATC 3 cut(s) 266, 563, 570
BciT130I CCWGG 1 cut(s) 422
BciVI GTATCC 1 cut(s) 350
BfaI CTAG 1 cut(s) 630
BfrI CTTAAG 1 cut(s) 575
BfuI GTATCC 1 cut(s) 350
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 115, 163, 626
BmiI GGNNCC 3 cut(s) 117, 155, 164
BmrFI CCNGG 1 cut(s) 422
BmrI ACTGGG 2 cut(s) 215, 606
BmsI GCATC 1 cut(s) 285
BmuI ACTGGG 2 cut(s) 215, 606
BpuEI CTTGAG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 158, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 501
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 2 cut(s) 210, 601
BseBI CCWGG 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 158, 421
BseGI GGATG 2 cut(s) 574, 586
BseLI CCNNNNNNNGG 2 cut(s) 172, 501
BseNI ACTGG 2 cut(s) 210, 601
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 2 cut(s) 116, 627
BshVI ATCGAT 1 cut(s) 262
BsiSI CCGG 1 cut(s) 331
BslFI GGGAC 2 cut(s) 176, 613
BslI CCNNNNNNNGG 2 cut(s) 172, 501
BsmFI GGGAC 2 cut(s) 176, 613
BsmI GAATGC 2 cut(s) 77, 469
BsnI GGCC 2 cut(s) 116, 627
Bsp143I GATC 2 cut(s) 259, 508
BspACI CCGC 3 cut(s) 76, 501, 545
BspANI GGCC 2 cut(s) 116, 627
BspDI ATCGAT 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 117, 155, 164
BspTI CTTAAG 1 cut(s) 575
BsrFI RCCGGY 1 cut(s) 330
BsrI ACTGG 2 cut(s) 210, 601
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 2 cut(s) 158, 421
BssMI GATC 2 cut(s) 259, 508
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 2 cut(s) 232, 622
BstAFI CTTAAG 1 cut(s) 575
BstDEI CTNAG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 574, 586
BstKTI GATC 2 cut(s) 262, 511
BstMBI GATC 2 cut(s) 259, 508
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 420
BstXI CCANNNNNNTGG 1 cut(s) 569
Bsu15I ATCGAT 1 cut(s) 262
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 2 cut(s) 116, 627
BsuTUI ATCGAT 1 cut(s) 262
BtsCI GGATG 2 cut(s) 574, 586
BtsIMutI CAGTG 3 cut(s) 203, 237, 369
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 3 cut(s) 115, 163, 626
ClaI ATCGAT 1 cut(s) 262
CviAII CATG 1 cut(s) 531
CviJI RGCY 9 cut(s) 8, 116, 127, 236, 323, 334, 574, 588, 627
CviKI_1 RGCY 9 cut(s) 8, 116, 127, 236, 323, 334, 574, 588, 627
DdeI CTNAG 1 cut(s) 475
DpnI GATC 2 cut(s) 261, 510
DpnII GATC 2 cut(s) 259, 508
Eco130I CCWWGG 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 1 cut(s) 534
FaiI YATR 7 cut(s) 21, 60, 69, 198, 486, 532, 606
FaqI GGGAC 2 cut(s) 176, 613
FatI CATG 1 cut(s) 530
FauI CCCGC 2 cut(s) 494, 538
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 2 cut(s) 581, 593
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 1 cut(s) 630
GluI GCNGC 1 cut(s) 76
HaeIII GGCC 2 cut(s) 116, 627
HapII CCGG 1 cut(s) 331
Hin1II CATG 1 cut(s) 534
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 331
HphI GGTGA 5 cut(s) 233, 391, 431, 526, 620
Hpy188I TCNGA 3 cut(s) 222, 376, 592
Hpy188III TCNNGA 4 cut(s) 269, 343, 566, 616
Hpy99I CGWCG 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 232, 622
HpyCH4V TGCA 2 cut(s) 314, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 475
Hsp92II CATG 1 cut(s) 534
Kzo9I GATC 2 cut(s) 259, 508
LmnI GCTCC 1 cut(s) 409
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 630
MaeIII GTNAC 3 cut(s) 201, 533, 608
MalI GATC 2 cut(s) 261, 510
MboI GATC 2 cut(s) 259, 508
MboII GAAGA 3 cut(s) 38, 286, 361
MluCI AATT 1 cut(s) 211
MnlI CCTC 4 cut(s) 296, 370, 390, 419
MseI TTAA 2 cut(s) 12, 576
MslI CAYNNNNRTG 1 cut(s) 567
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 422
Mva1269I GAATGC 2 cut(s) 77, 469
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 2 cut(s) 259, 508
NlaIII CATG 1 cut(s) 534
NlaIV GGNNCC 3 cut(s) 117, 155, 164
NmuCI GTSAC 2 cut(s) 201, 608
PctI GAATGC 2 cut(s) 77, 469
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 117, 155, 164
PspPI GGNCC 3 cut(s) 115, 163, 626
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 2 cut(s) 12, 576
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 259, 508
Sau96I GGNCC 3 cut(s) 115, 163, 626
ScrFI CCNGG 1 cut(s) 422
SetI ASST 9 cut(s) 43, 114, 129, 246, 325, 381, 401, 444, 590
SfaNI GCATC 1 cut(s) 285
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 2 cut(s) 122, 575
SmoI CTYRAG 2 cut(s) 122, 575
Sse9I AATT 1 cut(s) 211
SsiI CCGC 3 cut(s) 76, 501, 545
SspMI CTAG 1 cut(s) 630
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 232, 622
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 211
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 12, 576
Tru9I TTAA 2 cut(s) 12, 576
TscAI CASTG 3 cut(s) 210, 237, 369
TseFI GTSAC 2 cut(s) 201, 608
Tsp45I GTSAC 2 cut(s) 201, 608
TspDTI ATGAA 7 cut(s) 17, 39, 45, 84, 147, 204, 362
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 3 cut(s) 210, 237, 369
Vha464I CTTAAG 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 211
XspI CTAG 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.