RchiOBHm_Chr1g0322501

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000338
Physical Location & Seq
Reverse (-)
9874255 .. 9874775
521 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55249

Sequence Viewer

Length: 408 bp
ATGGCCTTATGGGTTCCACTTCTTCTGAATGATACAGTGGCTCATCACCTGTCAGTTTTGAAAGATCGATTTCCCCAATGGCATCAATGTCCTCTCTCTCTCCTATGGGATTGGTGGTGCAGAGGTAGCTCTTTATCAGCTTGGTATCCCGATGAAGAATGTTGTACAAACCAGAGACGGAACTTGTATCAGCTTGCTGATGTGCAAAAGTTGAATGCTGACCGCTTAGAGCATTATATCAGTTCCTTTGGCGGGTTTGATCTGGTGATTGGTGGCAGTCCATGTAACAATCTTGCGGGTGGCAACAGACACCATCGGGATGGGCTTGAGGGTAAAGAGTCTTCTCTTTTTTATGATTATTTTTGTATATTGGATTTGGTCAAGGGTATTATGGCAAGATACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

135

Amino Acids

15.6

Weight (kDa)

6.02

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 223, 252, 296
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 2 cut(s) 61, 214
AluBI AGCT 3 cut(s) 129, 140, 193
AluI AGCT 3 cut(s) 129, 140, 193
Alw26I GTCTC 1 cut(s) 169
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 2 cut(s) 38, 277
BarI GAAGNNNNNNTAC 2 cut(s) 325, 357
BbsI GAAGAC 1 cut(s) 333
BccI CCATC 2 cut(s) 314, 321
BciVI GTATCC 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 15
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 252
BseCI ATCGAT 1 cut(s) 67
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 164
Bsp143I GATC 2 cut(s) 64, 259
BspACI CCGC 3 cut(s) 223, 252, 296
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 164
BssMI GATC 2 cut(s) 64, 259
Bst4CI ACNGT 1 cut(s) 37
BstAUI TGTACA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 2 cut(s) 67, 262
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 64, 259
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 333
BstXI CCANNNNNNTGG 1 cut(s) 320
Bsu15I ATCGAT 1 cut(s) 67
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 67
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 67
Csp6I GTAC 1 cut(s) 165
CviAII CATG 1 cut(s) 282
CviJI RGCY 6 cut(s) 5, 41, 129, 140, 193, 325
CviKI_1 RGCY 6 cut(s) 5, 41, 129, 140, 193, 325
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 66, 261
DpnII GATC 2 cut(s) 64, 259
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 285
FaiI YATR 7 cut(s) 10, 106, 237, 283, 354, 368, 392
FatI CATG 1 cut(s) 281
FauI CCCGC 2 cut(s) 245, 289
FokI GGATG 1 cut(s) 332
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 285
HinfI GANTC 1 cut(s) 338
HphI GGTGA 2 cut(s) 38, 277
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 149, 317
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 120, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 226
Hsp92II CATG 1 cut(s) 285
Kzo9I GATC 2 cut(s) 64, 259
LpnPI CCDG 3 cut(s) 62, 185, 248
LweI GCATC 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 66, 261
MboI GATC 2 cut(s) 64, 259
MboII GAAGA 3 cut(s) 14, 167, 333
MfeI CAATTG 1 cut(s) 403
MluCI AATT 1 cut(s) 403
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 3 cut(s) 102, 116, 322
MslI CAYNNNNRTG 1 cut(s) 318
MunI CAATTG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 2 cut(s) 64, 259
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 15
PctI GAATGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 15
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 318
Sau3AI GATC 2 cut(s) 64, 259
SchI GAGTC 1 cut(s) 347
SetI ASST 5 cut(s) 51, 127, 131, 142, 195
SfaNI GCATC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 403
SsiI CCGC 3 cut(s) 223, 252, 296
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 67
TasI AATT 1 cut(s) 403
TatI WGTACW 1 cut(s) 164
TscAI CASTG 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.