Rh2DG662800

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000338
Physical Location & Seq
Forward (+)
88860582 .. 88860965
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG662800.1

Sequence Viewer

Length: 384 bp
ATGGCATCAATCTCCTCTCTCTTCTCTGGAATTGGCGGTGCAGAGATAGCCCTCCATCGGCTTGGCATTCGAATGAAGAATGTTGTGTCTGTTGAGATTTCAGTGGTGAGCAGAACTGTTGTGAGGACTTGGTGGGAGCAAACCAACCAAAAAGGAAACTTGTATCACCTCGCTGATGTGCAAGAGTTGAGTGCCGACCGGTTGGAGCATTACATCAATACATTTGGTGGGTTTGATCTCGTGGTTGGTGGAAGCCCGTGCAACAATCTTGCCGGTAGCAACAGACATCATAGGGATGGGCTTGAGGGAAAAGAATCTTCTCTATTTTATGATTATTTCCGTATATTAGACTTAGTGAAGGGTCTTATGGCAAGACATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

127

Amino Acids

14.13

Weight (kDa)

7.02

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_methylase PF00145 4 - 117 2.1e-10 C-5 cytosine-specific DNA methylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 57
AgeI ACCGGT 1 cut(s) 198
AluBI AGCT 1 cut(s) 381
AluI AGCT 1 cut(s) 381
AsiGI ACCGGT 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 118, 158
AsuII TTCGAA 1 cut(s) 70
BauI CACGAG 1 cut(s) 239
BccI CCATC 2 cut(s) 63, 290
BmsI GCATC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 323
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse118I RCCGGY 2 cut(s) 198, 272
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 60
Bsh1285I CGRYCG 1 cut(s) 199
BshTI ACCGGT 1 cut(s) 198
BsiEI CGRYCG 1 cut(s) 199
BsiSI CCGG 2 cut(s) 199, 273
BslI CCNNNNNNNGG 1 cut(s) 57
BsmI GAATGC 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 70
BsrFI RCCGGY 2 cut(s) 198, 272
BssAI RCCGGY 2 cut(s) 198, 272
BssMI GATC 1 cut(s) 235
BssSI CACGAG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 62
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 108
Cfr10I RCCGGY 2 cut(s) 198, 272
CspAI ACCGGT 1 cut(s) 198
CviJI RGCY 5 cut(s) 50, 61, 255, 301, 381
CviKI_1 RGCY 5 cut(s) 50, 61, 255, 301, 381
DdeI CTNAG 1 cut(s) 352
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
FaiI YATR 5 cut(s) 291, 330, 344, 368, 378
FokI GGATG 1 cut(s) 308
HapII CCGG 2 cut(s) 199, 273
HinfI GANTC 1 cut(s) 314
HpaII CCGG 2 cut(s) 199, 273
HphI GGTGA 2 cut(s) 118, 158
Hpy188III TCNNGA 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 41, 181, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 352
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 136, 205
LpnPI CCDG 3 cut(s) 12, 212, 286
LweI GCATC 1 cut(s) 14
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 3 cut(s) 13, 88, 309
MluCI AATT 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 5 cut(s) 25, 62, 117, 179, 298
MslI CAYNNNNRTG 2 cut(s) 71, 294
MspI CCGG 2 cut(s) 199, 273
Mva1269I GAATGC 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 1 cut(s) 235
NspV TTCGAA 1 cut(s) 70
PctI GAATGC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 314
PinAI ACCGGT 1 cut(s) 198
RseI CAYNNNNRTG 2 cut(s) 71, 294
Sau3AI GATC 1 cut(s) 235
SetI ASST 2 cut(s) 171, 383
SfaNI GCATC 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 71, 294
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 36
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 70
TasI AATT 1 cut(s) 30
TfiI GAWTC 1 cut(s) 314
TscAI CASTG 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.