Rorug02G0268000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000338
Physical Location & Seq
Reverse (-)
28303504 .. 28304952
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0268000.1

Sequence Viewer

Length: 1449 bp
ATGGAAGCTGAATGCAAATGCCTTCCAGGATTCGAGTCTATCACCCCGGGGGATCAGACTTCAGGCTGTGGGAGGAATATAGTTGCAGATATTTGCGAGTCAGAGAATGAAAACTTCACATACATCATGGAAGAACTGCCCAGCACAAGATGGGAAAATGTTGCATACATGACCTGGTCATCATCAGACAAAGAAGAATGCAACAAGGCCTGCTTGGAGGATTGCAACTGTGAAGCCGCACTTTTCGCAGATGGAAGCTGCAGAAAGCAGAGGCTTCCTTTGAATCTTGGAAGAAGAAGGTTAGATACTTCAAACTCAGCTTTCATCAAGGTTGGTATTTGTAAACCTCCAGCTACAGATAATATTATCCATCCAAAGGGAAACAAGAAAGAAGGTCGAGTTGCAGTCCTTATTCTTGGAGTTTCATTTACTGCTTTTGGGTCCATTTTGTTGGTGATCTCTGTAATTGTGTTTTGGAAACATAATGTATGGGCTTATAAAAGGATGAATAAGCTCAATGGTGATGTTGAATGGAATGAGGACGTGGCTCCGCGACCATTTGCTTATGAACAACTAGAGAAGATGACTGATAATTTCAAGGAGGAGGTTGGTAGAGGAGCTTCTGCAACAGTTTATAAAGGGGTGATGTTGAGTTGCCAAAAGCTAGTTGCTGTGAAGAAACTAGAGAAAGTTGCAGCTGAAGGAGCAAAAGAATTCCAGACTGAGATGAAAGTTATTGGCAGAACTCATCACCGAAGTTTAGTACGTTTGCTTGGGTATTGCCTTGATGGCCCAAAGAAGCTTTTGGTGTATGAGTACATGAGCAATGGATCACTTGCAGATATACTCTTCACACCTGAGAGGAAACCTTATTGGGAAGAAAGAATGGAAATAGCTCGACACATAGCACGGGGGTTTCTTTATCTGCATGAAGAGTGTGATACACAGATCATCCACTGTGACATAAAGCCTCAAAACATACTGATGGATGAGTACATGTGCCCCAAAATCTCTGACTTTGGTTTGGCAAAGTTGCTTCAGCAAGACCAGACTAGAACCACTACCGGAATTAGAGGGACTAAAGGGTATGTTGCGCCTGAGTGGCATAGGAAAATGCCAATTACAGTTAAAGCAGATGTTTATAGCTTTGGAATTGTGTTGTTGGAGATTGTGTGCTGTCGAAGGAATGTGGACTGGAGTCTTCATGTGGAGGAAGCTATCTTGGATGAATTGGTCTACCATTACTTCGAGAGTGGTGAACTCAGTAAATTGCTTGGGGATGAAGAGATAAACAGAAGGCAATTTGAAAGGGCGATTAAAGTGGGACTTTGGTGCATCCAGGATGAGCCAATGCTTCGTCCTTCTATGAAGAAGGTTCTGCTTATGTTGGAAGGGACTGTAGATATCCCAATCCCTCCGAATCCAAGTTCTTTTCTCAATACCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

482

Amino Acids

54.89

Weight (kDa)

6.03

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 199 - 404 2.4e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 200 - 460 1.5e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 498, 636
AccI GTMKAC 1 cut(s) 1236
AccII CGCG 1 cut(s) 553
AciI CCGC 2 cut(s) 237, 551
AclWI GGATC 2 cut(s) 60, 838
AcsI RAATTY 1 cut(s) 713
AcuI CTGAAG 3 cut(s) 45, 720, 1022
AfaI GTAC 3 cut(s) 765, 818, 995
AfiI CCNNNNNNNGG 1 cut(s) 376
AflIII ACRYGT 1 cut(s) 996
AgsI TTSAA 5 cut(s) 283, 312, 530, 598, 1307
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 3 cut(s) 25, 173, 1338
AlwI GGATC 2 cut(s) 60, 838
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 2 cut(s) 207, 790
ApeKI GCWGC 2 cut(s) 258, 695
ApoI RAATTY 1 cut(s) 713
AspLEI GCGC 1 cut(s) 1096
AspS9I GGNCC 2 cut(s) 441, 791
AsuC2I CCSGG 2 cut(s) 47, 48
AsuHPI GGTGA 6 cut(s) 34, 466, 533, 655, 743, 1268
AvaI CYCGRG 1 cut(s) 46
AvaII GGWCC 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 1004
BarI GAAGNNNNNNTAC 4 cut(s) 289, 321, 604, 636
BbsI GAAGAC 1 cut(s) 1193
BbvI GCAGC 2 cut(s) 245, 707
BccI CCATC 5 cut(s) 144, 245, 378, 782, 979
BciT130I CCWGG 3 cut(s) 27, 175, 1340
BcnI CCSGG 2 cut(s) 47, 48
BfaI CTAG 4 cut(s) 575, 665, 683, 1053
BfmI CTRYAG 3 cut(s) 259, 354, 1398
BglI GCCNNNNNGGC 2 cut(s) 789, 1102
BisI GCNGC 3 cut(s) 237, 259, 696
BlsI GCNGC 3 cut(s) 238, 260, 697
Bme1390I CCNGG 5 cut(s) 27, 47, 48, 175, 1340
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 46
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 441, 791
BmiI GGNNCC 2 cut(s) 442, 549
BmrFI CCNGG 5 cut(s) 27, 47, 48, 175, 1340
BmsI GCATC 1 cut(s) 1344
BoxI GACNNNNGTC 1 cut(s) 1197
BpiI GAAGAC 1 cut(s) 1193
BpmI CTGGAG 2 cut(s) 333, 1216
BpuMI CCSGG 2 cut(s) 47, 48
BsaJI CCNNGG 3 cut(s) 45, 46, 47
BsaWI WCCGGW 1 cut(s) 1064
BsaXI ACNNNNNCTCC 2 cut(s) 1157, 1187
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 1199
Bse3DI GCAATG 1 cut(s) 832
BseBI CCWGG 3 cut(s) 27, 175, 1340
BseDI CCNNGG 3 cut(s) 45, 46, 47
BseGI GGATG 8 cut(s) 370, 510, 951, 994, 1231, 1285, 1335, 1348
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 5 cut(s) 330, 714, 849, 1089, 1276
BseNI ACTGG 1 cut(s) 1199
BseRI GAGGAG 2 cut(s) 617, 630
BseSI GKGCMC 1 cut(s) 1004
BseXI GCAGC 2 cut(s) 245, 707
BseYI CCCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 553
BshFI GGCC 2 cut(s) 209, 792
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 47, 1065
BslFI GGGAC 3 cut(s) 1090, 1338, 1408
BslI CCNNNNNNNGG 1 cut(s) 376
BsmFI GGGAC 3 cut(s) 1090, 1338, 1408
BsmI GAATGC 2 cut(s) 17, 203
BsnI GGCC 2 cut(s) 209, 792
BsoBI CYCGRG 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 1004
Bsp143I GATC 4 cut(s) 52, 456, 830, 948
BspACI CCGC 2 cut(s) 237, 551
BspANI GGCC 2 cut(s) 209, 792
BspCNI CTCAG 5 cut(s) 329, 715, 850, 1090, 1275
BspFNI CGCG 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 442, 549
BspMAI CTGCAG 1 cut(s) 263
BspPI GGATC 2 cut(s) 60, 838
BsrDI GCAATG 1 cut(s) 832
BsrI ACTGG 1 cut(s) 1199
BssECI CCNNGG 3 cut(s) 45, 46, 47
BssMI GATC 4 cut(s) 52, 456, 830, 948
Bst2UI CCWGG 3 cut(s) 27, 175, 1340
Bst4CI ACNGT 5 cut(s) 230, 631, 959, 1126, 1399
Bst6I CTCTTC 3 cut(s) 854, 927, 1278
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 5 cut(s) 316, 723, 858, 1098, 1262
BstF5I GGATG 8 cut(s) 370, 510, 951, 994, 1231, 1285, 1335, 1348
BstFNI CGCG 1 cut(s) 553
BstHHI GCGC 1 cut(s) 1096
BstKTI GATC 4 cut(s) 55, 459, 833, 951
BstMBI GATC 4 cut(s) 52, 456, 830, 948
BstMWI GCNNNNNNNGC 4 cut(s) 245, 704, 789, 1102
BstNI CCWGG 3 cut(s) 27, 175, 1340
BstNSI RCATGY 1 cut(s) 1000
BstPAI GACNNNNGTC 1 cut(s) 1197
BstSCI CCNGG 5 cut(s) 25, 45, 46, 173, 1338
BstSFI CTRYAG 3 cut(s) 259, 354, 1398
BstSLI GKGCMC 1 cut(s) 1004
BstUI CGCG 1 cut(s) 553
BstV1I GCAGC 2 cut(s) 245, 707
BstV2I GAAGAC 1 cut(s) 1193
BstXI CCANNNNNNTGG 1 cut(s) 451
BsuRI GGCC 2 cut(s) 209, 792
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 8 cut(s) 370, 510, 951, 994, 1231, 1285, 1335, 1348
BtsIMutI CAGTG 1 cut(s) 955
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 1096
Cfr13I GGNCC 2 cut(s) 441, 791
Cfr9I CCCGGG 1 cut(s) 46
CsiI ACCWGGT 1 cut(s) 173
Csp6I GTAC 3 cut(s) 764, 817, 994
CviAII CATG 6 cut(s) 127, 169, 820, 929, 997, 1205
CviQI GTAC 3 cut(s) 764, 817, 994
DdeI CTNAG 5 cut(s) 316, 723, 858, 1098, 1262
DpnI GATC 4 cut(s) 54, 458, 832, 950
DpnII GATC 4 cut(s) 52, 456, 830, 948
Eam1104I CTCTTC 3 cut(s) 854, 927, 1278
EarI CTCTTC 3 cut(s) 854, 927, 1278
Eco147I AGGCCT 1 cut(s) 209
Eco32I GATATC 1 cut(s) 1405
Eco47I GGWCC 1 cut(s) 441
Eco57I CTGAAG 3 cut(s) 45, 720, 1022
Eco88I CYCGRG 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 713
EcoRII CCWGG 3 cut(s) 25, 173, 1338
EcoRV GATATC 1 cut(s) 1405
FaeI CATG 6 cut(s) 130, 172, 823, 932, 1000, 1208
FalI AAGNNNNNCTT 6 cut(s) 197, 229, 225, 257, 1311, 1343
FaqI GGGAC 3 cut(s) 1090, 1338, 1408
FatI CATG 6 cut(s) 126, 168, 819, 928, 996, 1204
FblI GTMKAC 1 cut(s) 1236
Fnu4HI GCNGC 3 cut(s) 237, 259, 696
FokI GGATG 8 cut(s) 357, 517, 938, 1001, 1238, 1292, 1322, 1355
Fsp4HI GCNGC 3 cut(s) 237, 259, 696
FspBI CTAG 4 cut(s) 575, 665, 683, 1053
GlaI GCGC 1 cut(s) 1095
GluI GCNGC 3 cut(s) 237, 259, 696
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 2 cut(s) 333, 1216
HaeIII GGCC 2 cut(s) 209, 792
HapII CCGG 2 cut(s) 47, 1065
HhaI GCGC 1 cut(s) 1096
Hin1II CATG 6 cut(s) 130, 172, 823, 932, 1000, 1208
Hin6I GCGC 1 cut(s) 1094
HinP1I GCGC 1 cut(s) 1094
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 6 cut(s) 30, 35, 98, 283, 1198, 1420
HpaII CCGG 2 cut(s) 47, 1065
HphI GGTGA 6 cut(s) 34, 466, 533, 655, 743, 1268
Hpy166II GTNNAC 4 cut(s) 344, 1192, 1237, 1259
Hpy188I TCNGA 5 cut(s) 57, 103, 187, 1015, 1419
Hpy188III TCNNGA 2 cut(s) 718, 1249
Hpy8I GTNNAC 4 cut(s) 344, 1192, 1237, 1259
HpyAV CCTTC 9 cut(s) 32, 291, 386, 695, 1176, 1290, 1366, 1371, 1385
HpyCH4III ACNGT 5 cut(s) 230, 631, 959, 1126, 1399
HpyCH4IV ACGT 2 cut(s) 543, 766
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 704, 789, 1102
HpyF3I CTNAG 5 cut(s) 316, 723, 858, 1098, 1262
HpySE526I ACGT 2 cut(s) 543, 766
Hsp92II CATG 6 cut(s) 130, 172, 823, 932, 1000, 1208
HspAI GCGC 1 cut(s) 1094
Kzo9I GATC 4 cut(s) 52, 456, 830, 948
LmnI GCTCC 3 cut(s) 553, 617, 704
Lsp1109I GCAGC 2 cut(s) 245, 707
LweI GCATC 1 cut(s) 1344
MabI ACCWGGT 1 cut(s) 173
MaeI CTAG 4 cut(s) 575, 665, 683, 1053
MaeII ACGT 2 cut(s) 543, 766
MaeIII GTNAC 1 cut(s) 959
MalI GATC 4 cut(s) 54, 458, 832, 950
MboI GATC 4 cut(s) 52, 456, 830, 948
MhlI GDGCHC 1 cut(s) 1004
MluCI AATT 9 cut(s) 465, 592, 713, 1068, 1119, 1152, 1229, 1268, 1301
MlyI GAGTC 3 cut(s) 44, 107, 1207
MmeI TCCRAC 2 cut(s) 1143, 1368
MseI TTAA 2 cut(s) 1128, 1317
MslI CAYNNNNRTG 1 cut(s) 983
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 2 cut(s) 47, 1065
MspR9I CCNGG 5 cut(s) 27, 47, 48, 175, 1340
Mva1269I GAATGC 2 cut(s) 17, 203
MvaI CCWGG 3 cut(s) 27, 175, 1340
MvnI CGCG 1 cut(s) 553
MwoI GCNNNNNNNGC 4 cut(s) 245, 704, 789, 1102
NciI CCSGG 2 cut(s) 47, 48
NdeII GATC 4 cut(s) 52, 456, 830, 948
NlaIII CATG 6 cut(s) 130, 172, 823, 932, 1000, 1208
NlaIV GGNNCC 2 cut(s) 442, 549
NmuCI GTSAC 1 cut(s) 959
NspI RCATGY 1 cut(s) 1000
PceI AGGCCT 1 cut(s) 209
PciI ACATGT 1 cut(s) 996
PctI GAATGC 2 cut(s) 17, 203
PfeI GAWTC 3 cut(s) 30, 283, 1420
PflFI GACNNNGTC 1 cut(s) 175
PfoI TCCNGGA 2 cut(s) 25, 1338
PkrI GCNGC 3 cut(s) 238, 260, 697
PleI GAGTC 3 cut(s) 43, 106, 1206
PpsI GAGTC 3 cut(s) 43, 106, 1206
PscI ACATGT 1 cut(s) 996
PshAI GACNNNNGTC 1 cut(s) 1197
PsiI TTATAA 2 cut(s) 498, 636
Psp6I CCWGG 3 cut(s) 25, 173, 1338
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 3 cut(s) 25, 173, 1338
PspN4I GGNNCC 2 cut(s) 442, 549
PspPI GGNCC 2 cut(s) 441, 791
PstI CTGCAG 1 cut(s) 263
PsyI GACNNNGTC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 3 cut(s) 765, 818, 995
RsaNI GTAC 3 cut(s) 764, 817, 994
RseI CAYNNNNRTG 1 cut(s) 983
SaqAI TTAA 2 cut(s) 1128, 1317
SatI GCNGC 3 cut(s) 237, 259, 696
Sau3AI GATC 4 cut(s) 52, 456, 830, 948
Sau96I GGNCC 2 cut(s) 441, 791
SchI GAGTC 3 cut(s) 44, 107, 1207
ScrFI CCNGG 5 cut(s) 27, 47, 48, 175, 1340
SduI GDGCHC 1 cut(s) 1004
SexAI ACCWGGT 1 cut(s) 173
SfaNI GCATC 1 cut(s) 1344
SfcI CTRYAG 3 cut(s) 259, 354, 1398
SinI GGWCC 1 cut(s) 441
SmaI CCCGGG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 983
Sse9I AATT 9 cut(s) 465, 592, 713, 1068, 1119, 1152, 1229, 1268, 1301
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 2 cut(s) 237, 551
SspI AATATT 1 cut(s) 364
SspMI CTAG 4 cut(s) 575, 665, 683, 1053
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 5 cut(s) 25, 45, 46, 173, 1338
TaaI ACNGT 5 cut(s) 230, 631, 959, 1126, 1399
TaiI ACGT 2 cut(s) 546, 769
TaqI TCGA 5 cut(s) 33, 397, 898, 1180, 1248
TasI AATT 9 cut(s) 465, 592, 713, 1068, 1119, 1152, 1229, 1268, 1301
TatI WGTACW 2 cut(s) 816, 993
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 3 cut(s) 30, 283, 1420
Tru1I TTAA 2 cut(s) 1128, 1317
Tru9I TTAA 2 cut(s) 1128, 1317
TscAI CASTG 1 cut(s) 962
TseFI GTSAC 1 cut(s) 959
TseI GCWGC 2 cut(s) 258, 695
Tsp45I GTSAC 1 cut(s) 959
TspMI CCCGGG 1 cut(s) 46
TspRI CASTG 1 cut(s) 962
Tth111I GACNNNGTC 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 713
XceI RCATGY 1 cut(s) 1000
XmaI CCCGGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 1236
XspI CTAG 4 cut(s) 575, 665, 683, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.