Rmu_sc0001932.1_g000013

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001932.1
OG0000338
Physical Location & Seq
Forward (+)
56873 .. 58149
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001932.1_g000013.1.cds

Sequence Viewer

Length: 591 bp
atgggacatggaaaccagatcataggggaagatgctggtgcagttcatctcccaaatccaataaatgggtttgggactccagctgatctctgtcaaatccagagaagtcttccagaggcagccacaggacctccttatttttactatgagaatgtggcattgactcctaaaggagtttggagcacaatatcccgctttttgtatgacgtgaagcctgagtttgttggttctaagtatttttgtgctgctgcaagaaagagggtggcttatcacctgtcagttttgaaagatcgatttcccaatggcatcaatgtcctctctctctcctatgggattggtggtgcagagacaaaccagagagggaacttgtatcaccttgctgatgtgcaaaagttgaatgctgaccgcttagagcattatatcagttcctttggcgggtttgatctggtgattggtggcagtccatgtaacaatcttgcgggtggcaacaggcaccattgggatgggcttgagggtaaagagtcttctcttttttatgattatttttgtatattggatttggtcaagggtattatggcaagatacaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

196

Amino Acids

21.58

Weight (kDa)

6.64

Isoelectric Point (pI)

26.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 492
AccB7I CCANNNNNTGG 1 cut(s) 65
AciI CCGC 4 cut(s) 193, 406, 435, 479
AfiI CCNNNNNNNGG 2 cut(s) 65, 435
AgsI TTSAA 2 cut(s) 286, 397
AjiI CACGTC 1 cut(s) 208
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 341
ApeKI GCWGC 3 cut(s) 119, 245, 248
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 3 cut(s) 263, 365, 460
AvaII GGWCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 492
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BbsI GAAGAC 2 cut(s) 101, 516
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 131, 232, 235
BccI CCATC 1 cut(s) 497
BcoDI GTCTC 1 cut(s) 341
BisI GCNGC 3 cut(s) 120, 246, 249
BlsI GCNGC 3 cut(s) 121, 247, 250
Bme18I GGWCC 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 494
BmsI GCATC 2 cut(s) 22, 315
BpiI GAAGAC 2 cut(s) 101, 516
BpmI CTGGAG 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 530
Bsa29I ATCGAT 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 435
BseCI ATCGAT 1 cut(s) 292
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 2 cut(s) 65, 435
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 3 cut(s) 131, 232, 235
BsgI GTGCAG 2 cut(s) 60, 363
BshNI GGYRCC 1 cut(s) 492
BshVI ATCGAT 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 185
BslFI GGGAC 2 cut(s) 18, 88
BslI CCNNNNNNNGG 2 cut(s) 65, 435
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 2 cut(s) 18, 88
BsmI GAATGC 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 4 cut(s) 18, 85, 289, 442
BspACI CCGC 4 cut(s) 193, 406, 435, 479
BspCNI CTCAG 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 492
BssMI GATC 4 cut(s) 18, 85, 289, 442
BstDEI CTNAG 3 cut(s) 216, 231, 409
BstF5I GGATG 1 cut(s) 508
BstKTI GATC 4 cut(s) 21, 88, 292, 445
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 4 cut(s) 18, 85, 289, 442
BstV1I GCAGC 3 cut(s) 131, 232, 235
BstV2I GAAGAC 2 cut(s) 101, 516
BstXI CCANNNNNNTGG 1 cut(s) 503
Bsu15I ATCGAT 1 cut(s) 292
BsuTUI ATCGAT 1 cut(s) 292
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 292
CviAII CATG 2 cut(s) 8, 465
CviJI RGCY 5 cut(s) 83, 122, 214, 266, 508
CviKI_1 RGCY 5 cut(s) 83, 122, 214, 266, 508
DdeI CTNAG 3 cut(s) 216, 231, 409
DpnI GATC 4 cut(s) 20, 87, 291, 444
DpnII GATC 4 cut(s) 18, 85, 289, 442
Eco47I GGWCC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 128
FaeI CATG 2 cut(s) 11, 468
FaqI GGGAC 2 cut(s) 18, 88
FatI CATG 2 cut(s) 7, 464
FauI CCCGC 3 cut(s) 200, 428, 472
Fnu4HI GCNGC 3 cut(s) 120, 246, 249
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 3 cut(s) 120, 246, 249
GluI GCNGC 3 cut(s) 120, 246, 249
GsuI CTGGAG 1 cut(s) 63
Hin1II CATG 2 cut(s) 11, 468
HinfI GANTC 3 cut(s) 76, 163, 521
HphI GGTGA 3 cut(s) 263, 365, 460
Hpy188III TCNNGA 2 cut(s) 100, 113
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 4 cut(s) 41, 251, 344, 388
HpyF3I CTNAG 3 cut(s) 216, 231, 409
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 2 cut(s) 11, 468
Kzo9I GATC 4 cut(s) 18, 85, 289, 442
LmnI GCTCC 1 cut(s) 180
Lsp1109I GCAGC 3 cut(s) 131, 232, 235
LweI GCATC 2 cut(s) 22, 315
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 467
MalI GATC 4 cut(s) 20, 87, 291, 444
MboI GATC 4 cut(s) 18, 85, 289, 442
MboII GAAGA 3 cut(s) 41, 101, 516
MfeI CAATTG 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 1 cut(s) 586
MlyI GAGTC 3 cut(s) 70, 157, 530
MnlI CCTC 6 cut(s) 109, 141, 252, 326, 353, 505
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 83
MunI CAATTG 1 cut(s) 586
Mva1269I GAATGC 1 cut(s) 403
NdeII GATC 4 cut(s) 18, 85, 289, 442
NlaIII CATG 2 cut(s) 11, 468
NlaIV GGNNCC 1 cut(s) 494
PctI GAATGC 1 cut(s) 403
PflMI CCANNNNNTGG 1 cut(s) 65
PkrI GCNGC 3 cut(s) 121, 247, 250
PleI GAGTC 3 cut(s) 70, 157, 529
PpsI GAGTC 3 cut(s) 70, 157, 529
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 501
SatI GCNGC 3 cut(s) 120, 246, 249
Sau3AI GATC 4 cut(s) 18, 85, 289, 442
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 3 cut(s) 70, 157, 530
SduI GDGCHC 1 cut(s) 185
SetI ASST 5 cut(s) 85, 133, 210, 276, 378
SfaNI GCATC 2 cut(s) 22, 315
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 1 cut(s) 586
SsiI CCGC 4 cut(s) 193, 406, 435, 479
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 292
TasI AATT 1 cut(s) 586
TseI GCWGC 3 cut(s) 119, 245, 248
TspDTI ATGAA 1 cut(s) 35
Van91I CCANNNNNTGG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.