Rh1DG057000

DNA (cytosine-5)-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
9242363 .. 9242779
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG057000.1

Sequence Viewer

Length: 417 bp
ATGCGGAGTGAGTATCCTGAGAAGAATAAAAGGAAACTTTGTGAATCTTCATTGCTGAAAAGGAAAAGGATTATGGGACATGGAAACCAGATCATAGGGGAAGATGCTGATGCAATTCATCTCCCAAATCCAATGATTGGGTTCAGGACTCCAGCTGATCTCTGTCAAATCCACAGAAGTCTTCCAGAGGCAGCCACAGGACCTCCTTATTTTTACTATCAGAATGTGGCATTGACTCCTAAAGGAGTCTGGAGCACAATATCCCGCTTTTTGTATGACGTGAAGCCTGAGTTTGTTGATGTGAAGTATTTTTGTGCTGCTGCAAGAAAAAGGGCAATGTTCACAATCTTCCAATCAAAAACAGATTTCCTCTCATTCCCCTTCCACCACAAACTATATTTGATGCATTTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

16.07

Weight (kDa)

9.54

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AciI CCGC 2 cut(s) 4, 265
AfiI CCNNNNNNNGG 1 cut(s) 137
AjiI CACGTC 1 cut(s) 280
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw21I GWGCWC 1 cut(s) 257
ApeKI GCWGC 3 cut(s) 191, 317, 320
AspS9I GGNCC 1 cut(s) 200
AvaII GGWCC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 203, 304, 307
BciVI GTATCC 1 cut(s) 24
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 3 cut(s) 192, 318, 321
BlsI GCNGC 3 cut(s) 193, 319, 322
Bme18I GGWCC 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 200
BmsI GCATC 3 cut(s) 94, 100, 393
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 2 cut(s) 135, 271
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse3DI GCAATG 2 cut(s) 50, 342
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 2 cut(s) 50, 342
BseMII CTCAG 2 cut(s) 9, 279
BseXI GCAGC 3 cut(s) 203, 304, 307
BsiHKAI GWGCWC 1 cut(s) 257
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 2 cut(s) 90, 157
BspACI CCGC 2 cut(s) 4, 265
BspCNI CTCAG 2 cut(s) 10, 280
BsrDI GCAATG 2 cut(s) 50, 342
BssMI GATC 2 cut(s) 90, 157
BstDEI CTNAG 2 cut(s) 18, 288
BstKTI GATC 2 cut(s) 93, 160
BstMBI GATC 2 cut(s) 90, 157
BstV1I GCAGC 3 cut(s) 203, 304, 307
BstV2I GAAGAC 1 cut(s) 173
BsuI GTATCC 1 cut(s) 24
BtrI CACGTC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 2 cut(s) 80, 414
CviJI RGCY 3 cut(s) 155, 194, 286
CviKI_1 RGCY 3 cut(s) 155, 194, 286
DdeI CTNAG 2 cut(s) 18, 288
DpnI GATC 2 cut(s) 92, 159
DpnII GATC 2 cut(s) 90, 157
Eco47I GGWCC 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 408
FaeI CATG 2 cut(s) 83, 417
FaiI YATR 6 cut(s) 74, 81, 95, 276, 397, 415
FaqI GGGAC 1 cut(s) 90
FatI CATG 2 cut(s) 79, 413
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 3 cut(s) 192, 318, 321
Fsp4HI GCNGC 3 cut(s) 192, 318, 321
GluI GCNGC 3 cut(s) 192, 318, 321
GsuI CTGGAG 2 cut(s) 135, 271
Hin1II CATG 2 cut(s) 83, 417
HinfI GANTC 4 cut(s) 44, 148, 235, 246
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 4 cut(s) 17, 145, 185, 250
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 3 cut(s) 113, 323, 406
HpyF3I CTNAG 2 cut(s) 18, 288
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 2 cut(s) 83, 417
Kzo9I GATC 2 cut(s) 90, 157
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 8 cut(s) 30, 101, 130, 165, 183, 198, 235, 300
Lsp1109I GCAGC 3 cut(s) 203, 304, 307
LweI GCATC 3 cut(s) 94, 100, 393
MaeII ACGT 1 cut(s) 279
MalI GATC 2 cut(s) 92, 159
MboI GATC 2 cut(s) 90, 157
MboII GAAGA 5 cut(s) 34, 39, 113, 173, 340
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 1 cut(s) 114
MlyI GAGTC 3 cut(s) 142, 229, 255
MnlI CCTC 3 cut(s) 181, 213, 380
Mph1103I ATGCAT 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 155
NdeII GATC 2 cut(s) 90, 157
NlaIII CATG 2 cut(s) 83, 417
NsiI ATGCAT 1 cut(s) 408
PfeI GAWTC 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 3 cut(s) 193, 319, 322
PleI GAGTC 3 cut(s) 142, 229, 254
PpsI GAGTC 3 cut(s) 142, 229, 254
PpuMI RGGWCCY 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 200
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 155
SatI GCNGC 3 cut(s) 192, 318, 321
Sau3AI GATC 2 cut(s) 90, 157
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 3 cut(s) 142, 229, 255
SduI GDGCHC 1 cut(s) 257
SetI ASST 3 cut(s) 157, 205, 282
SfaNI GCATC 3 cut(s) 94, 100, 393
SinI GGWCC 1 cut(s) 200
Sse9I AATT 1 cut(s) 114
SsiI CCGC 2 cut(s) 4, 265
TaiI ACGT 1 cut(s) 282
TasI AATT 1 cut(s) 114
TfiI GAWTC 1 cut(s) 44
TseI GCWGC 3 cut(s) 191, 317, 320
TspDTI ATGAA 2 cut(s) 39, 107
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.