Rh7BG379000

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000338
Physical Location & Seq
Reverse (-)
40788195 .. 40791123
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG379000.1

Sequence Viewer

Length: 279 bp
ATGTTCGCTCTGACCTCCATCAAGGGTATCGGTCGCCGTTTAGCCAACATCGTCTGCAAGAAGGCCGATGTCGACATGAACAGGAGGTTCGAAAAGGATTATGGGACATGGAAACCAGATCTAGGGGAAGATGCTGGTACAATTCATCTCCCGAATCCAATTAATGGGTTTGGGACTCCAGCTGATCTCTGTCAAATCCACAGAAGTCTTCCAGAGGCAGCCACAAGACCTCCTTATTTTTACTATGAGAATGTGGCATTGACTCCTGAAGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

92

Amino Acids

10.25

Weight (kDa)

6.71

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13 PF00416 2 - 31 2.1e-07 Ribosomal protein S13/S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 1 cut(s) 72
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 122, 164
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 218
AseI ATTAAT 1 cut(s) 162
AsuII TTCGAA 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 21
BfaI CTAG 1 cut(s) 122
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 164
BseLI CCNNNNNNNGG 2 cut(s) 122, 164
BseXI GCAGC 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 118, 187
BslI CCNNNNNNNGG 2 cut(s) 122, 164
BsmFI GGGAC 2 cut(s) 118, 187
BsnI GGCC 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 90
Bsp143I GATC 2 cut(s) 118, 184
BspANI GGCC 1 cut(s) 65
BspT104I TTCGAA 1 cut(s) 90
BssMI GATC 2 cut(s) 118, 184
BstBI TTCGAA 1 cut(s) 90
BstKTI GATC 2 cut(s) 121, 187
BstMBI GATC 2 cut(s) 118, 184
BstMCI CGRYCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 138
CviAII CATG 2 cut(s) 76, 108
CviJI RGCY 4 cut(s) 44, 65, 182, 221
CviKI_1 RGCY 4 cut(s) 44, 65, 182, 221
CviQI GTAC 1 cut(s) 138
DpnI GATC 2 cut(s) 120, 186
DpnII GATC 2 cut(s) 118, 184
FaeI CATG 2 cut(s) 79, 111
FaiI YATR 4 cut(s) 77, 102, 109, 246
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FaqI GGGAC 2 cut(s) 118, 187
FatI CATG 2 cut(s) 75, 107
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 2 cut(s) 79, 111
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 3 cut(s) 154, 175, 262
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 151, 212, 266
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 55, 263
HpyCH4V TGCA 1 cut(s) 57
Hsp92II CATG 2 cut(s) 79, 111
Kzo9I GATC 2 cut(s) 118, 184
LpnPI CCDG 5 cut(s) 67, 120, 129, 192, 225
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 122
MalI GATC 2 cut(s) 120, 186
MboI GATC 2 cut(s) 118, 184
MboII GAAGA 2 cut(s) 140, 200
MflI RGATCY 1 cut(s) 118
MluCI AATT 2 cut(s) 141, 159
MlyI GAGTC 2 cut(s) 169, 256
MnlI CCTC 4 cut(s) 25, 78, 208, 240
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 182
NdeII GATC 2 cut(s) 118, 184
NlaIII CATG 2 cut(s) 79, 111
NspV TTCGAA 1 cut(s) 90
PfeI GAWTC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 2 cut(s) 169, 256
PpsI GAGTC 2 cut(s) 169, 256
PshBI ATTAAT 1 cut(s) 162
PsuI RGATCY 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 118, 184
SchI GAGTC 2 cut(s) 169, 256
SetI ASST 4 cut(s) 17, 89, 184, 232
SfaNI GCATC 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 90
Sse9I AATT 2 cut(s) 141, 159
SspMI CTAG 1 cut(s) 122
TaqI TCGA 2 cut(s) 72, 90
TaqII GACCGA 1 cut(s) 20
TasI AATT 2 cut(s) 141, 159
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 92, 134
Van91I CCANNNNNTGG 1 cut(s) 164
VspI ATTAAT 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.