Rw1G004430

DNA (cytosine-5)-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
8459845 .. 8465745
5901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004430.1

Sequence Viewer

Length: 1371 bp
ATGTATGCCCCGTCCTCTTTCGGATTCTTGAGTTTGTCTTCAACAGACGTCGAGTACTCATACAGTAGTCCTATTATACTGCTTGGATTTCATACATTATCATATTATACTATTAGTCACTTTATTCGTATCATTCTAGATTCTCCTCCAGAGCAGTGCTCTCCTCAAGAACAGCAACAAACTGACTCGGATCTCTTTTCTTCAGATTATGATGGGAGCTTTCTAGATAGTTTTTCAGACCTCGTTAGCTCTGATGATGAGGTAACCATCGATCCTACATCTGAGGCGGAGACAAAACTTATGTCCCTGGTTAAAATGAGGTACAATGAATTGGAGGCTTCAATGGCAATAGAAAGATGCGGTATTGCTTCATCAGTTGTTGATTTGACTGATTTCATATCAGCTGCTCAAATTTCAAAGGCCATCTTCCCCTTGACGAGATGTGAGTATCCTGAGAAGAATAAAAGGAAACTTTGTGAATCTTCATTGCTGAAAAGGAAAAGGATTATGGGACATGGAAACCAGATCAGAGGGGAAGATGCTGGTGCAGTTCATCTCCCAAATCCAATAAATGGGTTTGGGACTCCAGCTGATCTCTGTCAAATCCAGAGAAGTCTTCCAGAGGCAGCCACAGGACCTCCTTATTTTTACTATGAGAATGTGGCATTGACTCCTAAAGGAGTTTGGAGCACAATATCCCGCTTTTTGTATGACGTGAAGCCTGAGTTTGTTGGTTCTAAGTATTTTTGTGCTGCTGCAAGAAAGAGGGGTTATATGCACAATCTTCCAATCAAACACAGAATTCCTCTCGTAGTGGCCTACTGGGATGATTGGACAAAGCTAAATTGCTTACAGACTTGCATTGCTAGTGCAACAATTACTGAGAGGATCATGAAGGCTCTTAAAGACTATAATGAAGATGAAATCCCACCAGAAAGTGTCCGTCGCTATTTTTACTTATGGGTTCCACTTCTTCTGAATGATACAGTGGCTTATCACCTGTCAGTTTTGAAAGATCGATTTCCCAATGGCATCAATGTCCTCTCTCTCTCCTATGGGATTGGTGGTGCAGAGGTAGCTCTTTATCAGCTTGGTATCCCGATGAAGAATGTTGTGTGTTGGTGGGGGCAGACAAACCAGAGAGGGAACTTGTATCACCTTGCTGATGTGCAAAAGTTGAATGCTGACCGCTTAGAGCATTATATCAGTTCCTTTGGCGGGTTTGATCTGGTGATTGGTGGCAGTCCATGTAACAATCTTGCGGGTGGCAACAGGCACCATTGGGATGGGCTTGAGGGTAAAGAGTCTCTTTTTTATGATTATTTTTGTATATTGGATTTGGTCAAGGGTATTATGGCAAGATACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

456

Amino Acids

51.4

Weight (kDa)

5.61

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14620
fragaria_vesca FvH4_6g30300 FvH4_6g30450 FvH4_6g50980 FvH4_6g50980
malus_domestica MD09G1029900.v1.1 MD17G1031900.v1.1
prunus_persica Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.3G287400_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1 Prupe.8G038800_v2.0.a1
pyrus_communis pycom111g02390 pycom17g02950
rosa_chinensis RchiOBHm_Chr1g0321581 RchiOBHm_Chr1g0321601 RchiOBHm_Chr1g0322481 RchiOBHm_Chr1g0322501 RchiOBHm_Chr1g0322511 RchiOBHm_Chr1g0322631 RchiOBHm_Chr1g0322691 RchiOBHm_Chr1g0322751 RchiOBHm_Chr1g0323101 RchiOBHm_Chr1g0323111 RchiOBHm_Chr1g0328981 RchiOBHm_Chr1g0328991 RchiOBHm_Chr2g0136781 RchiOBHm_Chr2g0136791 RchiOBHm_Chr2g0136801 RchiOBHm_Chr2g0172381
rosa_laevigata RLG00000019575 RLG00000019577 RLG00000030366 RLG00000030370 RLG00000030377 RLG00000030379
rosa_multiflora Rmu_co8075278.1_g000001 Rmu_co8206584.1_g000001 Rmu_sc0000467.1_g000002 Rmu_sc0000467.1_g000007 Rmu_sc0001299.1_g000016 Rmu_sc0001932.1_g000013 Rmu_sc0002132.1_g000049 Rmu_sc0005093.1_g000002 Rmu_sc0005949.1_g000027 Rmu_sc0007485.1_g000011 Rmu_sc0007799.1_g000006 Rmu_sc0023751.1_g000001 Rmu_sc0039575.1_g000001
rosa_roxburghii Rroxscaffold_2G00107990 Rroxscaffold_2G00129580 Rroxscaffold_4G00326990
rosa_rugosa Rorug01G0034500 Rorug01G0035900 Rorug01G0036600 Rorug02G0268000 Rorug02G0333200 Rorug02G0333200 Rorug02G0333300 Rorug02G0333300 Rorug02G0333400 Rorug02G0333500 Rorug02G0333600 Rorug02G0333700 Rorug02G0333700 Rorug02G0333700 Rorug02G0558900 Rorug02G0559000 Rorug06G0043800 Rorug06G0044300
rosa_samantha Rh1AG051000 Rh1AG052400 Rh1AG052600 Rh1AG053200 Rh1AG053300 Rh1AG054000 Rh1BG046600 Rh1BG109100 Rh1CG048300 Rh1CG053000 Rh1CG053100 Rh1DG057000 Rh2AG384300 Rh2AG634100 Rh2BG390900 Rh2BG391000 Rh2BG647800 Rh2BG648200 Rh2CG370600 Rh2CG370800 Rh2CG614800 Rh2DG407600 Rh2DG407700 Rh2DG662800 Rh7BG379000
rosa_wichuraiana Rw1G004090 Rw1G004430 Rw2G031410 Rw2G031420 Rw2G052520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 1275
AccB7I CCANNNNNTGG 1 cut(s) 572
AciI CCGC 6 cut(s) 287, 360, 700, 1189, 1218, 1262
AclWI GGATC 3 cut(s) 198, 266, 896
AcsI RAATTY 2 cut(s) 411, 801
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 56, 323
AfiI CCNNNNNNNGG 2 cut(s) 572, 1218
AgsI TTSAA 5 cut(s) 42, 342, 417, 1012, 1180
AjiI CACGTC 1 cut(s) 715
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 7 cut(s) 219, 249, 404, 590, 841, 1079, 1090
AluI AGCT 7 cut(s) 219, 249, 404, 590, 841, 1079, 1090
Alw21I GWGCWC 2 cut(s) 161, 692
Alw26I GTCTC 2 cut(s) 284, 1311
AlwI GGATC 3 cut(s) 198, 266, 896
AoxI GGCC 2 cut(s) 420, 816
ApeKI GCWGC 4 cut(s) 404, 626, 752, 755
ApoI RAATTY 2 cut(s) 411, 801
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspS9I GGNCC 1 cut(s) 635
AsuHPI GGTGA 3 cut(s) 989, 1148, 1243
AvaII GGWCC 1 cut(s) 635
BanI GGYRCC 1 cut(s) 1275
BbsI GAAGAC 2 cut(s) 30, 608
Bbv12I GWGCWC 2 cut(s) 161, 692
BbvI GCAGC 4 cut(s) 391, 638, 739, 742
BccI CCATC 4 cut(s) 206, 275, 431, 1280
BciT130I CCWGG 1 cut(s) 308
BciVI GTATCC 2 cut(s) 459, 1106
BcoDI GTCTC 2 cut(s) 284, 1311
BfaI CTAG 3 cut(s) 137, 224, 867
BfuI GTATCC 2 cut(s) 459, 1106
BisI GCNGC 4 cut(s) 405, 627, 753, 756
BlsI GCNGC 4 cut(s) 406, 628, 754, 757
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 715
BmgT120I GGNCC 1 cut(s) 635
BmiI GGNNCC 2 cut(s) 966, 1277
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 832
BmsI GCATC 3 cut(s) 347, 529, 1041
BmuI ACTGGG 1 cut(s) 832
BpiI GAAGAC 2 cut(s) 30, 608
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpmI CTGGAG 2 cut(s) 132, 570
BpuEI CTTGAG 3 cut(s) 49, 150, 1313
Bsa29I ATCGAT 2 cut(s) 270, 1018
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 1218
Bse1I ACTGG 1 cut(s) 827
Bse3DI GCAATG 2 cut(s) 485, 861
BseBI CCWGG 1 cut(s) 308
BseCI ATCGAT 2 cut(s) 270, 1018
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 832, 1291
BseLI CCNNNNNNNGG 2 cut(s) 572, 1218
BseMI GCAATG 2 cut(s) 485, 861
BseMII CTCAG 4 cut(s) 273, 444, 714, 873
BseNI ACTGG 1 cut(s) 827
BseRI GAGGAG 2 cut(s) 135, 153
BseXI GCAGC 4 cut(s) 391, 638, 739, 742
BsgI GTGCAG 2 cut(s) 567, 1089
BshFI GGCC 2 cut(s) 422, 818
BshNI GGYRCC 1 cut(s) 1275
BshVI ATCGAT 2 cut(s) 270, 1018
BsiHKAI GWGCWC 2 cut(s) 161, 692
BslFI GGGAC 3 cut(s) 289, 525, 595
BslI CCNNNNNNNGG 2 cut(s) 572, 1218
BsmAI GTCTC 2 cut(s) 284, 1311
BsmFI GGGAC 3 cut(s) 289, 525, 595
BsmI GAATGC 1 cut(s) 1186
BsnI GGCC 2 cut(s) 422, 818
Bsp1286I GDGCHC 2 cut(s) 161, 692
Bsp143I GATC 7 cut(s) 190, 271, 525, 592, 888, 1015, 1225
BspACI CCGC 6 cut(s) 287, 360, 700, 1189, 1218, 1262
BspANI GGCC 2 cut(s) 422, 818
BspCNI CTCAG 4 cut(s) 274, 445, 715, 874
BspDI ATCGAT 2 cut(s) 270, 1018
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 2 cut(s) 966, 1277
BspPI GGATC 3 cut(s) 198, 266, 896
BspT107I GGYRCC 1 cut(s) 1275
BsrDI GCAATG 2 cut(s) 485, 861
BsrI ACTGG 1 cut(s) 827
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 7 cut(s) 190, 271, 525, 592, 888, 1015, 1225
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 65, 988
BstACI GRCGYC 1 cut(s) 48
BstDEI CTNAG 6 cut(s) 282, 453, 723, 738, 882, 1192
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 2 cut(s) 832, 1291
BstKTI GATC 7 cut(s) 193, 274, 528, 595, 891, 1018, 1228
BstMAI GTCTC 2 cut(s) 284, 1311
BstMBI GATC 7 cut(s) 190, 271, 525, 592, 888, 1015, 1225
BstMWI GCNNNNNNNGC 2 cut(s) 344, 1076
BstNI CCWGG 1 cut(s) 308
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 4 cut(s) 391, 638, 739, 742
BstV2I GAAGAC 2 cut(s) 30, 608
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 1286
BstYI RGATCY 1 cut(s) 190
Bsu15I ATCGAT 2 cut(s) 270, 1018
BsuI GTATCC 2 cut(s) 459, 1106
BsuRI GGCC 2 cut(s) 422, 818
BsuTUI ATCGAT 2 cut(s) 270, 1018
BtrI CACGTC 1 cut(s) 715
BtsCI GGATG 2 cut(s) 832, 1291
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 2 cut(s) 161, 993
CciI TCATGA 1 cut(s) 891
Cfr13I GGNCC 1 cut(s) 635
ClaI ATCGAT 2 cut(s) 270, 1018
Csp6I GTAC 2 cut(s) 55, 322
CviAII CATG 3 cut(s) 515, 892, 1248
CviQI GTAC 2 cut(s) 55, 322
DdeI CTNAG 6 cut(s) 282, 453, 723, 738, 882, 1192
DpnI GATC 7 cut(s) 192, 273, 527, 594, 890, 1017, 1227
DpnII GATC 7 cut(s) 190, 271, 525, 592, 888, 1015, 1225
EciI GGCGGA 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 635
Eco57I CTGAAG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 635
EcoO65I GGTNACC 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 801
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 518, 895, 1251
FalI AAGNNNNNCTT 4 cut(s) 410, 442, 1293, 1325
FaqI GGGAC 3 cut(s) 289, 525, 595
FatI CATG 3 cut(s) 514, 891, 1247
FauI CCCGC 3 cut(s) 707, 1211, 1255
Fnu4HI GCNGC 4 cut(s) 405, 627, 753, 756
FokI GGATG 2 cut(s) 839, 1298
Fsp4HI GCNGC 4 cut(s) 405, 627, 753, 756
FspBI CTAG 3 cut(s) 137, 224, 867
GluI GCNGC 4 cut(s) 405, 627, 753, 756
GsuI CTGGAG 2 cut(s) 132, 570
HaeIII GGCC 2 cut(s) 422, 818
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 3 cut(s) 518, 895, 1251
HinfI GANTC 7 cut(s) 24, 140, 185, 479, 583, 670, 1304
HphI GGTGA 3 cut(s) 989, 1148, 1243
Hpy188I TCNGA 8 cut(s) 23, 190, 205, 238, 253, 283, 530, 978
Hpy99I CGWCG 2 cut(s) 53, 948
HpyAV CCTTC 1 cut(s) 889
HpyCH4III ACNGT 2 cut(s) 65, 988
HpyCH4IV ACGT 2 cut(s) 48, 714
HpyCH4V TGCA 7 cut(s) 548, 758, 778, 861, 872, 1070, 1171
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 1076
HpyF3I CTNAG 6 cut(s) 282, 453, 723, 738, 882, 1192
HpySE526I ACGT 2 cut(s) 48, 714
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 3 cut(s) 518, 895, 1251
Kzo9I GATC 7 cut(s) 190, 271, 525, 592, 888, 1015, 1225
LmnI GCTCC 2 cut(s) 216, 687
Lsp1109I GCAGC 4 cut(s) 391, 638, 739, 742
LweI GCATC 3 cut(s) 347, 529, 1041
MaeI CTAG 3 cut(s) 137, 224, 867
MaeII ACGT 2 cut(s) 48, 714
MaeIII GTNAC 3 cut(s) 116, 262, 1250
MalI GATC 7 cut(s) 192, 273, 527, 594, 890, 1017, 1227
MboI GATC 7 cut(s) 190, 271, 525, 592, 888, 1015, 1225
MfeI CAATTG 1 cut(s) 1366
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 161, 692
MluCI AATT 6 cut(s) 329, 411, 801, 844, 876, 1366
MlyI GAGTC 4 cut(s) 179, 577, 664, 1313
MseI TTAA 2 cut(s) 312, 903
MslI CAYNNNNRTG 1 cut(s) 1284
MspA1I CMGCKG 2 cut(s) 404, 590
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 1366
Mva1269I GAATGC 1 cut(s) 1186
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 344, 1076
NdeII GATC 7 cut(s) 190, 271, 525, 592, 888, 1015, 1225
NlaIII CATG 3 cut(s) 518, 895, 1251
NlaIV GGNNCC 2 cut(s) 966, 1277
NmuCI GTSAC 1 cut(s) 116
PagI TCATGA 1 cut(s) 891
PctI GAATGC 1 cut(s) 1186
PfeI GAWTC 3 cut(s) 24, 140, 479
PflMI CCANNNNNTGG 1 cut(s) 572
PkrI GCNGC 4 cut(s) 406, 628, 754, 757
PleI GAGTC 4 cut(s) 179, 577, 664, 1312
PpsI GAGTC 4 cut(s) 179, 577, 664, 1312
PpuMI RGGWCCY 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 306
PspEI GGTNACC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 966, 1277
PspPI GGNCC 1 cut(s) 635
PspPPI RGGWCCY 1 cut(s) 635
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 404, 590
RsaI GTAC 2 cut(s) 56, 323
RsaNI GTAC 2 cut(s) 55, 322
RseI CAYNNNNRTG 1 cut(s) 1284
SaqAI TTAA 2 cut(s) 312, 903
SatI GCNGC 4 cut(s) 405, 627, 753, 756
Sau3AI GATC 7 cut(s) 190, 271, 525, 592, 888, 1015, 1225
Sau96I GGNCC 1 cut(s) 635
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 4 cut(s) 179, 577, 664, 1313
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 161, 692
SfaNI GCATC 3 cut(s) 347, 529, 1041
SinI GGWCC 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 1284
SmlI CTYRAG 3 cut(s) 28, 165, 1292
SmoI CTYRAG 3 cut(s) 28, 165, 1292
Sse9I AATT 6 cut(s) 329, 411, 801, 844, 876, 1366
SsiI CCGC 6 cut(s) 287, 360, 700, 1189, 1218, 1262
SspMI CTAG 3 cut(s) 137, 224, 867
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 65, 988
TaiI ACGT 2 cut(s) 51, 717
TaqI TCGA 3 cut(s) 51, 270, 1018
TasI AATT 6 cut(s) 329, 411, 801, 844, 876, 1366
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 3 cut(s) 24, 140, 479
Tru1I TTAA 2 cut(s) 312, 903
Tru9I TTAA 2 cut(s) 312, 903
TscAI CASTG 2 cut(s) 161, 993
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 4 cut(s) 404, 626, 752, 755
Tsp45I GTSAC 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 932
TspRI CASTG 2 cut(s) 161, 993
Van91I CCANNNNNTGG 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 2 cut(s) 411, 801
XbaI TCTAGA 2 cut(s) 136, 223
XspI CTAG 3 cut(s) 137, 224, 867
ZraI GACGTC 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.