RchiOBHm_Chr1g0314451

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000698
Physical Location & Seq
Forward (+)
1704535 .. 1705724
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 894 bp
ATGGGCTTTGTGTACGGAGAACTACTTAGAGCCAAAGAGGAGATTAAAATGGCATTCAAAGATCAAGAAGCTCACTATCGTCCAATCCTTGACATTGTTGATGGAAAAGCCCGTGATCGGCTTGATAGTCCATTGCATTTAGCGGGTTACCTCTTGAACCCTTACTACACATATGCCAATTCAAGCATTGAGAATGATAATGTAGTCATGGATGGGTTCTTCACTTGTGTTGAGGTATTCTTTCCCGATGACATTCAAACTCAAAGTTTGGTGACAAATGTAGAATTGCACAAGTATTTGAAGAAAGAGGGTGGATTTGGAAGAAGTTTGGCTAAGGCGGGATGCGCACAAAATGATGACAATTATAATCCGGTTTTGTGGTGGAATATTTATGGTAACCTTGTACCAAAATTGCAAAGTATGGCTAAAAGGATACTTGCATTGACCACAAGCTCATCCGGATGTGAGAGAAATTGGAGCACTTTTGAGGGGATCCATACAAAGAAAAGGAATAGACTAGATACAACGAGGTTAAACAATTTAGTCTATGTCCAATTCAATGCCAAGATTCTCAACAAGAAGAGAAGAATGAAAGAGAGGAATGTGGATGTATTACTAGCATGTGAAGCTACTATGGCCCAAGGATGGATTGTGGATGGTGGTGATGAAGATGTAGATTCCGATCTTACTAGTGATGTAGTTGGAGAGGGATCGGGATTGGGAGTGGATAGTAGCTTAGAGCCTAGGAGAAGTAGTAGAATTCAAGAAATTAGAGAACTTCATGAGGATGATTTTGTATCGGATGAAGAGGAAGAAGATGAGATGACTTTTGAGTTTGACTCCGATGAGGAGGGAGTACTAGAGGGATATGGAGAAGAAGAATTTGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

297

Amino Acids

33.85

Weight (kDa)

4.57

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 113 - 187 2.7e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
Acc16I TGCGCA 1 cut(s) 346
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 2 cut(s) 143, 338
AclWI GGATC 3 cut(s) 487, 500, 718
AcsI RAATTY 2 cut(s) 759, 881
AfaI GTAC 3 cut(s) 14, 405, 858
AfiI CCNNNNNNNGG 2 cut(s) 117, 645
AgsI TTSAA 7 cut(s) 58, 157, 183, 257, 301, 559, 764
AhlI ACTAGT 1 cut(s) 689
AluBI AGCT 4 cut(s) 71, 453, 629, 735
AluI AGCT 4 cut(s) 71, 453, 629, 735
Alw21I GWGCWC 1 cut(s) 482
AlwI GGATC 3 cut(s) 487, 500, 718
Aor13HI TCCGGA 1 cut(s) 458
AoxI GGCC 1 cut(s) 636
ApoI RAATTY 2 cut(s) 759, 881
AspA2I CCTAGG 1 cut(s) 743
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 637
AsuHPI GGTGA 2 cut(s) 283, 674
AvrII CCTAGG 1 cut(s) 743
BamHI GGATCC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 482
BccI CCATC 4 cut(s) 95, 206, 639, 650
BciVI GTATCC 1 cut(s) 426
BcuI ACTAGT 1 cut(s) 689
BfaI CTAG 5 cut(s) 518, 617, 690, 744, 860
BfuI GTATCC 1 cut(s) 426
BlnI CCTAGG 1 cut(s) 743
BmcAI AGTACT 1 cut(s) 858
BmgT120I GGNCC 1 cut(s) 637
BmiI GGNNCC 1 cut(s) 494
BmsI GCATC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 824, 856
Bpu10I CCTNAGC 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 681
BsaJI CCNNGG 2 cut(s) 640, 743
BsaWI WCCGGW 2 cut(s) 370, 458
BsaXI ACNNNNNCTCC 2 cut(s) 739, 769
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 645
Bse3DI GCAATG 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 681
BseAI TCCGGA 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 640, 743
BseGI GGATG 9 cut(s) 217, 347, 455, 467, 613, 650, 661, 793, 808
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 2 cut(s) 117, 645
BseMI GCAATG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 53, 863
BshFI GGCC 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 482
BsiSI CCGG 2 cut(s) 371, 459
BslI CCNNNNNNNGG 2 cut(s) 117, 645
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 1 cut(s) 638
Bsp1286I GDGCHC 1 cut(s) 482
Bsp13I TCCGGA 1 cut(s) 458
Bsp143I GATC 5 cut(s) 61, 115, 492, 682, 710
BspACI CCGC 2 cut(s) 143, 338
BspANI GGCC 1 cut(s) 638
BspEI TCCGGA 1 cut(s) 458
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 1 cut(s) 494
BspPI GGATC 3 cut(s) 487, 500, 718
BsrDI GCAATG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 640, 743
BssMI GATC 5 cut(s) 61, 115, 492, 682, 710
BssT1I CCWWGG 2 cut(s) 640, 743
Bst6I CTCTTC 2 cut(s) 575, 801
BstDEI CTNAG 3 cut(s) 26, 333, 736
BstEII GGTNACC 2 cut(s) 146, 395
BstF5I GGATG 9 cut(s) 217, 347, 455, 467, 613, 650, 661, 793, 808
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 5 cut(s) 64, 118, 495, 685, 713
BstMBI GATC 5 cut(s) 61, 115, 492, 682, 710
BstMWI GCNNNNNNNGC 3 cut(s) 344, 626, 635
BstNSI RCATGY 1 cut(s) 624
BstPI GGTNACC 2 cut(s) 146, 395
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 1 cut(s) 638
BtsCI GGATG 9 cut(s) 217, 347, 455, 467, 613, 650, 661, 793, 808
CciI TCATGA 1 cut(s) 781
CfoI GCGC 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 637
Csp6I GTAC 3 cut(s) 13, 404, 857
CviAII CATG 3 cut(s) 208, 621, 782
CviQI GTAC 3 cut(s) 13, 404, 857
DdeI CTNAG 3 cut(s) 26, 333, 736
DpnI GATC 5 cut(s) 63, 117, 494, 684, 712
DpnII GATC 5 cut(s) 61, 115, 492, 682, 710
Eam1104I CTCTTC 2 cut(s) 575, 801
EarI CTCTTC 2 cut(s) 575, 801
Eco130I CCWWGG 2 cut(s) 640, 743
Eco91I GGTNACC 2 cut(s) 146, 395
EcoO65I GGTNACC 2 cut(s) 146, 395
EcoRI GAATTC 1 cut(s) 759
EcoT14I CCWWGG 2 cut(s) 640, 743
ErhI CCWWGG 2 cut(s) 640, 743
FaeI CATG 3 cut(s) 211, 624, 785
FatI CATG 3 cut(s) 207, 620, 781
FauI CCCGC 2 cut(s) 136, 331
FauNDI CATATG 1 cut(s) 172
FokI GGATG 9 cut(s) 224, 354, 442, 474, 620, 657, 668, 800, 815
FspAI RTGCGCAY 1 cut(s) 346
FspBI CTAG 5 cut(s) 518, 617, 690, 744, 860
FspI TGCGCA 1 cut(s) 346
GlaI GCGC 1 cut(s) 346
HaeIII GGCC 1 cut(s) 638
HapII CCGG 2 cut(s) 371, 459
HhaI GCGC 1 cut(s) 347
Hin1II CATG 3 cut(s) 211, 624, 785
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 3 cut(s) 568, 677, 839
HpaII CCGG 2 cut(s) 371, 459
HphI GGTGA 2 cut(s) 283, 674
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 682, 802, 844
Hpy188III TCNNGA 7 cut(s) 65, 154, 245, 459, 714, 764, 782
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 136, 289, 415, 440
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 626, 635
HpyF3I CTNAG 3 cut(s) 26, 333, 736
Hsp92II CATG 3 cut(s) 211, 624, 785
HspAI GCGC 1 cut(s) 345
Kpn2I TCCGGA 1 cut(s) 458
Kzo9I GATC 5 cut(s) 61, 115, 492, 682, 710
LmnI GCTCC 1 cut(s) 477
LpnPI CCDG 2 cut(s) 384, 472
LweI GCATC 1 cut(s) 332
MaeI CTAG 5 cut(s) 518, 617, 690, 744, 860
MaeIII GTNAC 3 cut(s) 146, 271, 395
MalI GATC 5 cut(s) 63, 117, 494, 684, 712
MboI GATC 5 cut(s) 61, 115, 492, 682, 710
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 482
MlyI GAGTC 1 cut(s) 833
MmeI TCCRAC 1 cut(s) 682
MroI TCCGGA 1 cut(s) 458
MseI TTAA 2 cut(s) 45, 533
MslI CAYNNNNRTG 2 cut(s) 460, 786
MspI CCGG 2 cut(s) 371, 459
Mva1269I GAATGC 1 cut(s) 53
MwoI GCNNNNNNNGC 3 cut(s) 344, 626, 635
NdeI CATATG 1 cut(s) 172
NdeII GATC 5 cut(s) 61, 115, 492, 682, 710
NlaIII CATG 3 cut(s) 211, 624, 785
NlaIV GGNNCC 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 271
NsbI TGCGCA 1 cut(s) 346
NspI RCATGY 1 cut(s) 624
PagI TCATGA 1 cut(s) 781
PctI GAATGC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 568, 677
PleI GAGTC 1 cut(s) 833
PpsI GAGTC 1 cut(s) 833
PsiI TTATAA 1 cut(s) 366
PspEI GGTNACC 2 cut(s) 146, 395
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 1 cut(s) 637
PsrI GAACNNNNNNTAC 2 cut(s) 149, 181
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 3 cut(s) 14, 405, 858
RsaNI GTAC 3 cut(s) 13, 404, 857
RseI CAYNNNNRTG 2 cut(s) 460, 786
SaqAI TTAA 2 cut(s) 45, 533
Sau3AI GATC 5 cut(s) 61, 115, 492, 682, 710
Sau96I GGNCC 1 cut(s) 637
ScaI AGTACT 1 cut(s) 858
SchI GAGTC 1 cut(s) 833
SduI GDGCHC 1 cut(s) 482
SetI ASST 8 cut(s) 73, 153, 237, 402, 455, 533, 631, 737
SfaNI GCATC 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 460, 786
SpeI ACTAGT 1 cut(s) 689
SsiI CCGC 2 cut(s) 143, 338
SspI AATATT 1 cut(s) 388
SspMI CTAG 5 cut(s) 518, 617, 690, 744, 860
StyI CCWWGG 2 cut(s) 640, 743
TatI WGTACW 1 cut(s) 856
TfiI GAWTC 2 cut(s) 568, 677
Tru1I TTAA 2 cut(s) 45, 533
Tru9I TTAA 2 cut(s) 45, 533
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 4 cut(s) 605, 681, 770, 819
TspGWI ACGGA 1 cut(s) 30
XapI RAATTY 2 cut(s) 759, 881
XceI RCATGY 1 cut(s) 624
XmaJI CCTAGG 1 cut(s) 743
XspI CTAG 5 cut(s) 518, 617, 690, 744, 860
ZrmI AGTACT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.