RchiOBHm_Chr1g0320691

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000782
Physical Location & Seq
Forward (+)
8302983 .. 8303969
987 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55081

Sequence Viewer

Length: 282 bp
ATGCAAAAGAGCATTTGTATTGTTCTTTTGCCACTGTTCCTAATTCTGATATTGGGTGTTTGTTCGTTGTCCTATTGTAATTCAGATATTGGGGATAGTGTGCTATTCAAATTTGGAAGTACTGTGGATTCAGAAACTATGATGAGGGGAAGAAAAAGATTATTAATACAGTGTGCTGCTGGAAGTAATGAAAGTAAAGACACAATTGAGCAAAGGAGAACTAAACGTAATCGTGTTTTTTTTGGTGGAGATGAATACGATCGAATTAACTCAGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.56

Weight (kDa)

8.82

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 1 cut(s) 121
AgsI TTSAA 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 110
AseI ATTAAT 1 cut(s) 164
BbvI GCAGC 1 cut(s) 163
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmcAI AGTACT 1 cut(s) 121
BseXI GCAGC 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 262
BsiEI CGRYCG 1 cut(s) 262
Bsp143I GATC 1 cut(s) 259
BssMI GATC 1 cut(s) 259
Bst4CI ACNGT 3 cut(s) 36, 124, 171
BstDEI CTNAG 1 cut(s) 271
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMCI CGRYCG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 32, 176
Csp6I GTAC 1 cut(s) 120
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 271
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
FaiI YATR 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HinfI GANTC 1 cut(s) 128
Hpy188I TCNGA 4 cut(s) 48, 85, 133, 274
HpyCH4III ACNGT 3 cut(s) 36, 124, 171
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 226
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 1 cut(s) 165
Lsp1109I GCAGC 1 cut(s) 163
MaeII ACGT 1 cut(s) 226
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 1 cut(s) 162
MfeI CAATTG 1 cut(s) 204
MluCI AATT 5 cut(s) 42, 79, 110, 204, 264
MnlI CCTC 1 cut(s) 138
MseI TTAA 2 cut(s) 164, 267
MunI CAATTG 1 cut(s) 204
NdeII GATC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 178
Ple19I CGATCG 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 164
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 164, 267
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 259
ScaI AGTACT 1 cut(s) 121
SetI ASST 1 cut(s) 229
SgeI CNNG 2 cut(s) 192, 245
Sse9I AATT 5 cut(s) 42, 79, 110, 204, 264
TaaI ACNGT 3 cut(s) 36, 124, 171
TaiI ACGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 262
TasI AATT 5 cut(s) 42, 79, 110, 204, 264
TatI WGTACW 1 cut(s) 119
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 164, 267
Tru9I TTAA 2 cut(s) 164, 267
TscAI CASTG 2 cut(s) 39, 176
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 204, 267
TspRI CASTG 2 cut(s) 39, 176
VspI ATTAAT 1 cut(s) 164
XapI RAATTY 1 cut(s) 110
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.