Rh3BG369400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000782
Physical Location & Seq
Forward (+)
46325287 .. 46328221
2935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG369400.1

Sequence Viewer

Length: 678 bp
ATGCCTAGGACAAGAAAACAGTTCTTCAATATGAGAGGAGAAGAGGGATTTGAGTGTTGGTTTGTTTTGGCTTGCTCGGGAAATTTGAAGTTTAGTGGTCCTGTTGGAGGGCGGTGTGGAACGAGAACAGAGATGGAAGATAAAAGTGTGAGGAAAGGAATGAAGAGATTATTACTGCCGTCTGCTGCTGAAAGAAGTGGATCTGATCCTCTTATCTCTAAGAGGTTTAGAGCAATGTTGCATTCGCACATCGTTGAAACATTGAATGAACCTCAGAATGTAGATGCATTTGAACATAATGAGAATGAAGTTAGAGATGCAGAGATTGGACGAAAGCGCACATTGAGGAGAATGAAGACATTGTTAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTGACGATAATTTGTTTCATTCAGACATTGTTGAAGGATCGAGTCAACGTGACGATCAATTTAGAAATGATGAATTACTGAATGTTGTTACCGAGGATGGTCAAGTGGCACCAAAGAGTGTGATGAGGCGAATGAAGAAATTGTTATTCAAGCCTTCTGATAAAAATTACAAAATTGGAGAGACAATTGAGCAAGGTAGAATTGAATCTCATTGTATGTGCTCTACACCATTGATTTATGTTGACAATGATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.75

Weight (kDa)

6.55

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 529
AciI CCGC 1 cut(s) 112
AclWI GGATC 3 cut(s) 200, 208, 466
AcsI RAATTY 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 8 cut(s) 28, 88, 257, 265, 293, 455, 571, 626
Alw21I GWGCWC 1 cut(s) 644
Alw26I GTCTC 2 cut(s) 395, 596
AlwI GGATC 3 cut(s) 200, 208, 466
Ama87I CYCGRG 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 82
AspA2I CCTAGG 1 cut(s) 5
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 98
AvrII CCTAGG 1 cut(s) 5
BanI GGYRCC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 127, 512
BceAI ACGGC 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 395, 596
BfaI CTAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 186
BlnI CCTAGG 1 cut(s) 5
BlsI GCNGC 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 531
BmsI GCATC 2 cut(s) 274, 307
BpiI GAAGAC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 5, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 5, 513
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 287
BseRI GAGGAG 2 cut(s) 51, 361
BseXI GCAGC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 395, 596
BsmI GAATGC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 4 cut(s) 200, 205, 458, 475
BspACI CCGC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 3 cut(s) 200, 208, 466
BspT107I GGYRCC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 5, 513
BssMI GATC 4 cut(s) 200, 205, 458, 475
BssT1I CCWWGG 1 cut(s) 5
Bst4CI ACNGT 2 cut(s) 21, 372
Bst6I CTCTTC 2 cut(s) 36, 158
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 219, 273
BstENI CCTNNNNNAGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 523
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 4 cut(s) 203, 208, 461, 478
BstMAI GTCTC 2 cut(s) 395, 596
BstMBI GATC 4 cut(s) 200, 205, 458, 475
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BtsCI GGATG 1 cut(s) 523
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 98
CviJI RGCY 2 cut(s) 71, 574
CviKI_1 RGCY 2 cut(s) 71, 574
DdeI CTNAG 2 cut(s) 219, 273
DpnI GATC 4 cut(s) 202, 207, 460, 477
DpnII GATC 4 cut(s) 200, 205, 458, 475
Eam1104I CTCTTC 2 cut(s) 36, 158
EarI CTCTTC 2 cut(s) 36, 158
Eco130I CCWWGG 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 5
EcoT22I ATGCAT 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 5
FaiI YATR 4 cut(s) 32, 297, 638, 660
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 530
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 186
HhaI GCGC 1 cut(s) 339
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 2 cut(s) 467, 664
HindII GTYRAC 2 cut(s) 467, 664
HinfI GANTC 2 cut(s) 463, 626
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 467, 664
Hpy188I TCNGA 4 cut(s) 205, 276, 445, 580
Hpy188III TCNNGA 1 cut(s) 78
Hpy8I GTNNAC 2 cut(s) 467, 664
HpyAV CCTTC 2 cut(s) 449, 585
HpyCH4III ACNGT 2 cut(s) 21, 372
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 4 cut(s) 241, 287, 320, 392
HpyF3I CTNAG 2 cut(s) 219, 273
HpySE526I ACGT 1 cut(s) 469
HspAI GCGC 1 cut(s) 337
Kzo9I GATC 4 cut(s) 200, 205, 458, 475
LpnPI CCDG 1 cut(s) 114
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 274, 307
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 2 cut(s) 470, 508
MalI GATC 4 cut(s) 202, 207, 460, 477
MboI GATC 4 cut(s) 200, 205, 458, 475
MboII GAAGA 7 cut(s) 16, 53, 149, 175, 367, 429, 568
MfeI CAATTG 3 cut(s) 393, 405, 606
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 644
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 289
MunI CAATTG 3 cut(s) 393, 405, 606
Mva1269I GAATGC 1 cut(s) 241
NdeII GATC 4 cut(s) 200, 205, 458, 475
NlaIV GGNNCC 1 cut(s) 531
NmuCI GTSAC 1 cut(s) 470
NsiI ATGCAT 1 cut(s) 289
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 626
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 200
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 4 cut(s) 200, 205, 458, 475
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 472
SduI GDGCHC 1 cut(s) 644
SetI ASST 4 cut(s) 227, 274, 472, 619
SfaNI GCATC 2 cut(s) 274, 307
SinI GGWCC 1 cut(s) 98
SsiI CCGC 1 cut(s) 112
SspMI CTAG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 21, 372
TaiI ACGT 1 cut(s) 472
TaqI TCGA 1 cut(s) 461
TfiI GAWTC 1 cut(s) 626
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 7 cut(s) 176, 282, 321, 368, 428, 507, 569
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 105
XapI RAATTY 1 cut(s) 82
XmaJI CCTAGG 1 cut(s) 5
XspI CTAG 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.