Rroxscaffold_5G00334920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000782
Physical Location & Seq
Forward (+)
2316335 .. 2325145
8811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334920.1

Sequence Viewer

Length: 816 bp
ATGCAAAAGAGCATTTGTATTGTTCTTTTGCCACTGTTCCTGATTCTGATATTGGGTGTTTGTTCGTTGTCCTATTGTAATTCAGATATTAGGGATAGTGTGCTATTCAAATTTGGAAGTACTGTGGATTCAGTGATGGCGTCAGAAACTATGATGAGGGGAAGAAAAAGATTATTAATACAGTGTGCTGCTGGAAGTAATGAAAGTAAAGACACAATTGAGCAAAGGAGAACTAGGAGAACTACACGTAATCGTGTTTTTTTTGGTGGAGATGAATATGATCAAATTAACTCAGAGAGATGGAAAACGATGTTTGATCCTCAAATTGCTGAAGCATCAAATGTATGTGAGAATGTCACTGGAATTGAACATTCTGACAAACAATGGAGAGCTAACGACCAAAATGTTGGTGCAACTCTAAATGAAGATCCACTTATGGGTCTAGAAGTTATGCCGGTAGAGACTGCTTGCACAAGAACACGTCATGCTGAAAATTATGACAATCAAGGGGAAATTCAAGAAATCTGTGATGCTCAGGATTCTAGCATAACCGCAGCTGAATCTGAAAGTATATTTTCCGGTTTGGACGAAGGTCATCAGATTAGATCAGAAAGGTGGAGAAAAGCTTTTGGACCAGCAGCGTCAAAAAAGAGCCAAACTTTGTCCCATTCCGAATCTACAAATGATCATTCGCTATTTCTGCAAACGGATGATACCAGAGGTGAATGCTCACATTCATTTGGCCAGGCCTTATATCAAAAAAGAAAACAAGGATCTGCTGTGACATATGAAGACTCAGTCAACGGAAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.36

Weight (kDa)

5.25

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 552
AclWI GGATC 3 cut(s) 311, 422, 781
AcoI YGGCCR 1 cut(s) 742
AcsI RAATTY 2 cut(s) 110, 513
AcuI CTGAAG 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 437
AflIII ACRYGT 2 cut(s) 245, 479
AgsI TTSAA 3 cut(s) 109, 368, 518
AjiI CACGTC 1 cut(s) 482
AjnI CCWGG 1 cut(s) 744
AluBI AGCT 3 cut(s) 392, 557, 626
AluI AGCT 3 cut(s) 392, 557, 626
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 3 cut(s) 311, 422, 781
AoxI GGCC 2 cut(s) 742, 747
ApeKI GCWGC 3 cut(s) 188, 554, 638
ApoI RAATTY 2 cut(s) 110, 513
AseI ATTAAT 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 632
AsuHPI GGTGA 1 cut(s) 734
AvaII GGWCC 1 cut(s) 632
BalI TGGCCA 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 798
BbvI GCAGC 3 cut(s) 175, 566, 650
BccI CCATC 2 cut(s) 130, 294
BciT130I CCWGG 1 cut(s) 746
BclI TGATCA 2 cut(s) 280, 685
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 3 cut(s) 234, 443, 543
BisI GCNGC 3 cut(s) 189, 555, 639
BlsI GCNGC 3 cut(s) 190, 556, 640
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 746
Bme18I GGWCC 1 cut(s) 632
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 632
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 2 cut(s) 344, 520
BoxI GACNNNNGTC 1 cut(s) 591
BpiI GAAGAC 1 cut(s) 798
Bpu10I CCTNAGC 1 cut(s) 534
BsaAI YACGTR 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 746
BseGI GGATG 1 cut(s) 715
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMII CTCAG 3 cut(s) 306, 548, 810
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 3 cut(s) 175, 566, 650
BshFI GGCC 2 cut(s) 744, 749
BsiSI CCGG 2 cut(s) 455, 579
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 649
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 2 cut(s) 744, 749
Bsp143I GATC 6 cut(s) 280, 316, 427, 605, 685, 773
BspACI CCGC 1 cut(s) 552
BspANI GGCC 2 cut(s) 744, 749
BspCNI CTCAG 3 cut(s) 305, 547, 809
BspPI GGATC 3 cut(s) 311, 422, 781
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 454
BssMI GATC 6 cut(s) 280, 316, 427, 605, 685, 773
BssNI GRCGYC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 3 cut(s) 36, 124, 183
BstACI GRCGYC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 3 cut(s) 292, 534, 796
BstF5I GGATG 1 cut(s) 715
BstKTI GATC 6 cut(s) 283, 319, 430, 608, 688, 776
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 6 cut(s) 280, 316, 427, 605, 685, 773
BstMWI GCNNNNNNNGC 1 cut(s) 700
BstNI CCWGG 1 cut(s) 746
BstPAI GACNNNNGTC 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 744
BstV1I GCAGC 3 cut(s) 175, 566, 650
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 2 cut(s) 427, 773
BstXI CCANNNNNNTGG 1 cut(s) 407
BstYI RGATCY 2 cut(s) 427, 773
BsuRI GGCC 2 cut(s) 744, 749
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 4 cut(s) 32, 138, 188, 357
Cac8I GCNNGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 632
CseI GACGC 2 cut(s) 129, 630
Csp6I GTAC 1 cut(s) 120
CviAII CATG 1 cut(s) 485
CviJI RGCY 6 cut(s) 392, 557, 626, 654, 744, 749
CviKI_1 RGCY 6 cut(s) 392, 557, 626, 654, 744, 749
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 3 cut(s) 292, 534, 796
DpnI GATC 6 cut(s) 282, 318, 429, 607, 687, 775
DpnII GATC 6 cut(s) 280, 316, 427, 605, 685, 773
EaeI YGGCCR 1 cut(s) 742
Eco147I AGGCCT 1 cut(s) 749
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 744
FaeI CATG 1 cut(s) 488
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 649
FatI CATG 1 cut(s) 484
FauNDI CATATG 1 cut(s) 787
FbaI TGATCA 2 cut(s) 280, 685
Fnu4HI GCNGC 3 cut(s) 189, 555, 639
FokI GGATG 1 cut(s) 722
Fsp4HI GCNGC 3 cut(s) 189, 555, 639
FspBI CTAG 3 cut(s) 234, 443, 543
GluI GCNGC 3 cut(s) 189, 555, 639
HaeIII GGCC 2 cut(s) 744, 749
HapII CCGG 2 cut(s) 455, 579
HgaI GACGC 2 cut(s) 129, 630
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 1 cut(s) 488
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 6 cut(s) 43, 128, 539, 560, 674, 794
HpaII CCGG 2 cut(s) 455, 579
HphI GGTGA 1 cut(s) 734
Hpy166II GTNNAC 1 cut(s) 802
Hpy188I TCNGA 9 cut(s) 48, 85, 145, 295, 376, 565, 600, 610, 673
Hpy188III TCNNGA 4 cut(s) 40, 443, 518, 536
Hpy8I GTNNAC 1 cut(s) 802
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 3 cut(s) 36, 124, 183
HpyCH4IV ACGT 2 cut(s) 247, 481
HpyCH4V TGCA 4 cut(s) 4, 413, 471, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 700
HpyF3I CTNAG 3 cut(s) 292, 534, 796
HpySE526I ACGT 2 cut(s) 247, 481
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 1 cut(s) 488
Ksp22I TGATCA 2 cut(s) 280, 685
Kzo9I GATC 6 cut(s) 280, 316, 427, 605, 685, 773
Lsp1109I GCAGC 3 cut(s) 175, 566, 650
LweI GCATC 2 cut(s) 344, 520
MaeI CTAG 3 cut(s) 234, 443, 543
MaeII ACGT 2 cut(s) 247, 481
MaeIII GTNAC 2 cut(s) 355, 781
MalI GATC 6 cut(s) 282, 318, 429, 607, 687, 775
MboI GATC 6 cut(s) 280, 316, 427, 605, 685, 773
MboII GAAGA 3 cut(s) 174, 437, 803
MfeI CAATTG 2 cut(s) 216, 811
MflI RGATCY 2 cut(s) 427, 773
MlsI TGGCCA 1 cut(s) 744
MluCI AATT 9 cut(s) 79, 110, 216, 285, 324, 363, 493, 513, 811
MluNI TGGCCA 1 cut(s) 744
MlyI GAGTC 1 cut(s) 788
MnlI CCTC 3 cut(s) 150, 330, 713
Mox20I TGGCCA 1 cut(s) 744
MscI TGGCCA 1 cut(s) 744
MseI TTAA 2 cut(s) 176, 288
Msp20I TGGCCA 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 2 cut(s) 455, 579
MspR9I CCNGG 1 cut(s) 746
MunI CAATTG 2 cut(s) 216, 811
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 1 cut(s) 700
NdeI CATATG 1 cut(s) 787
NdeII GATC 6 cut(s) 280, 316, 427, 605, 685, 773
NlaIII CATG 1 cut(s) 488
NmuCI GTSAC 2 cut(s) 355, 781
PceI AGGCCT 1 cut(s) 749
PctI GAATGC 1 cut(s) 731
PfeI GAWTC 5 cut(s) 43, 128, 539, 560, 674
PflFI GACNNNGTC 1 cut(s) 797
PkrI GCNGC 3 cut(s) 190, 556, 640
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
Ppu21I YACGTR 1 cut(s) 248
PshAI GACNNNNGTC 1 cut(s) 591
PshBI ATTAAT 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspPI GGNCC 1 cut(s) 632
PsuI RGATCY 2 cut(s) 427, 773
PsyI GACNNNGTC 1 cut(s) 797
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 176, 288
SatI GCNGC 3 cut(s) 189, 555, 639
Sau3AI GATC 6 cut(s) 280, 316, 427, 605, 685, 773
Sau96I GGNCC 1 cut(s) 632
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 1 cut(s) 746
SetI ASST 8 cut(s) 250, 394, 484, 559, 595, 617, 628, 724
SfaNI GCATC 2 cut(s) 344, 520
SinI GGWCC 1 cut(s) 632
Sse9I AATT 9 cut(s) 79, 110, 216, 285, 324, 363, 493, 513, 811
SseBI AGGCCT 1 cut(s) 749
SsiI CCGC 1 cut(s) 552
SspMI CTAG 3 cut(s) 234, 443, 543
StuI AGGCCT 1 cut(s) 749
StyD4I CCNGG 1 cut(s) 744
TaaI ACNGT 3 cut(s) 36, 124, 183
TaiI ACGT 2 cut(s) 250, 484
TasI AATT 9 cut(s) 79, 110, 216, 285, 324, 363, 493, 513, 811
TatI WGTACW 1 cut(s) 119
TfiI GAWTC 5 cut(s) 43, 128, 539, 560, 674
Tru1I TTAA 2 cut(s) 176, 288
Tru9I TTAA 2 cut(s) 176, 288
TscAI CASTG 4 cut(s) 39, 138, 188, 364
TseFI GTSAC 2 cut(s) 355, 781
TseI GCWGC 3 cut(s) 188, 554, 638
Tsp45I GTSAC 2 cut(s) 355, 781
TspDTI ATGAA 5 cut(s) 216, 288, 438, 726, 804
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 4 cut(s) 39, 138, 188, 364
Tth111I GACNNNGTC 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 632
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 2 cut(s) 110, 513
XbaI TCTAGA 1 cut(s) 442
XspI CTAG 3 cut(s) 234, 443, 543
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.