Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

32733844 .. 32734512

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029090

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGTATAGTTGACATACACATGGGAGGCAATGAGGCACGCCGATTCAAAGCCTCTTCCATTAAACCACCTGCAGAACAGAGACAAACAATCAGCGTCAGTGTCTTCGCTTTCGTGTCCACTGACGGCTCCGTCAGAGTGTTCGACTTGCGTGACAAGGAGCATTCCGCCATGATCTACGAGAGTTCCGATCCCGACACCCCCTTGGTCCGCCTCGGATGGAGCAAGCAGGACTCCAGGTACATGGCCACCATCATCATGGACAGTGCCAAGGCCGTCGTCCTCAACATCTGCTTCCTGCTTATCCTGTCGTCGAGTTGCAGAGGCACCAGGCTAGCGTCAACGCCGTTGCTTGGGCCCCGCACAGCTCTTGCCACATCTGCACTACCGAGGATGACTCACAAGCCCACATCTGGGACCTCTCCTCCATGGGCCAACCTGTCGAGGCCTGATTGCGGCGTAGTCGAAGCCGACTTTACCACCGGAAAGATCGGTGAAGCTGAGGTTACTGGGGGCGTGGCCGGTGGCCTGGAAGAGGGTGGTGGGGAGGACGGAGCCGTCGGAGATTTGGGGAGCTTGGCGGGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

197

Amino Acids

20.54

Weight (kDa)

5.62

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
AasI	GACNNNNNNGTC	2 cut(s)	131, 557
Acc36I	ACCTGC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	5 cut(s)	168, 211, 361, 456, 581
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	246, 519
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	5 cut(s)	353, 413, 414, 455, 535
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	3 cut(s)	236, 329, 528
AluBI	AGCT	3 cut(s)	368, 500, 576
AluI	AGCT	3 cut(s)	368, 500, 576
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	7 cut(s)	246, 273, 356, 432, 446, 519, 526
ApaI	GGGCCC	1 cut(s)	360
AspS9I	GGNCC	5 cut(s)	208, 356, 357, 417, 432
AsuHPI	GGTGA	1 cut(s)	506
AsuNHI	GCTAGC	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	208, 417
BaeGI	GKGCMC	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	97
BbvCI	CCTCAGC	1 cut(s)	501
BccI	CCATC	2 cut(s)	213, 260
BceAI	ACGGC	4 cut(s)	142, 260, 331, 542
BciT130I	CCWGG	3 cut(s)	238, 331, 530
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	457
BlsI	GCNGC	1 cut(s)	458
Bme1390I	CCNGG	3 cut(s)	238, 331, 530
Bme18I	GGWCC	2 cut(s)	208, 417
BmgT120I	GGNCC	5 cut(s)	208, 356, 357, 417, 432
BmiI	GGNNCC	6 cut(s)	130, 328, 358, 359, 418, 556
BmrFI	CCNGG	3 cut(s)	238, 331, 530
BmrI	ACTGGG	1 cut(s)	519
BmtI	GCTAGC	1 cut(s)	338
BmuI	ACTGGG	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
BpmI	CTGGAG	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	501
BsaJI	CCNNGG	5 cut(s)	204, 214, 270, 389, 428
BsaWI	WCCGGW	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	5 cut(s)	353, 413, 414, 455, 535
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	514
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	3 cut(s)	238, 331, 530
BseDI	CCNNGG	5 cut(s)	204, 214, 270, 389, 428
BseGI	GGATG	2 cut(s)	224, 399
BseLI	CCNNNNNNNGG	5 cut(s)	353, 413, 414, 455, 535
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	7 cut(s)	248, 275, 358, 434, 448, 521, 528
BshNI	GGYRCC	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	483, 522
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	5 cut(s)	353, 413, 414, 455, 535
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	7 cut(s)	248, 275, 358, 434, 448, 521, 528
Bsp120I	GGGCCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	174, 190, 489
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	5 cut(s)	168, 211, 361, 456, 581
BspANI	GGCC	7 cut(s)	248, 275, 358, 434, 448, 521, 528
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	6 cut(s)	130, 328, 358, 359, 418, 556
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	5 cut(s)	204, 214, 270, 389, 428
BssMI	GATC	3 cut(s)	174, 190, 489
BssT1I	CCWWGG	3 cut(s)	204, 270, 428
Bst2UI	CCWGG	3 cut(s)	238, 331, 530
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	2 cut(s)	61, 528
BstC8I	GCNNGC	3 cut(s)	40, 227, 336
BstDEI	CTNAG	1 cut(s)	501
BstDSI	CCRYGG	1 cut(s)	428
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	224, 399
BstKTI	GATC	3 cut(s)	177, 193, 492
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	3 cut(s)	174, 190, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	3 cut(s)	238, 331, 530
BstSCI	CCNGG	3 cut(s)	236, 329, 528
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	97
BstXI	CCANNNNNNTGG	2 cut(s)	244, 259
BsuRI	GGCC	7 cut(s)	248, 275, 358, 434, 448, 521, 528
BtgI	CCRYGG	1 cut(s)	428
BtsCI	GGATG	2 cut(s)	224, 399
BtsIMutI	CAGTG	3 cut(s)	106, 120, 271
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	40, 227, 336
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	5 cut(s)	208, 356, 357, 417, 432
CseI	GACGC	2 cut(s)	85, 327
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	5 cut(s)	22, 172, 244, 259, 429
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	3 cut(s)	176, 192, 491
DpnII	GATC	3 cut(s)	174, 190, 489
DrdI	GACNNNNNNGTC	2 cut(s)	131, 557
DseDI	GACNNNNNNGTC	2 cut(s)	131, 557
EaeI	YGGCCR	2 cut(s)	246, 519
Eam1104I	CTCTTC	2 cut(s)	61, 528
EarI	CTCTTC	2 cut(s)	61, 528
EciI	GGCGGA	2 cut(s)	157, 200
Eco130I	CCWWGG	3 cut(s)	204, 270, 428
Eco147I	AGGCCT	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	2 cut(s)	208, 417
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoO109I	RGGNCCY	2 cut(s)	357, 417
EcoRII	CCWGG	3 cut(s)	236, 329, 528
EcoT14I	CCWWGG	3 cut(s)	204, 270, 428
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	3 cut(s)	204, 270, 428
FaeI	CATG	5 cut(s)	25, 175, 247, 262, 432
FaiI	YATR	8 cut(s)	8, 17, 23, 173, 245, 260, 430, 589
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	5 cut(s)	21, 171, 243, 258, 428
FauI	CCCGC	2 cut(s)	368, 574
Fnu4HI	GCNGC	1 cut(s)	457
FokI	GGATG	2 cut(s)	231, 406
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	457
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	1 cut(s)	457
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	7 cut(s)	248, 275, 358, 434, 448, 521, 528
HapII	CCGG	2 cut(s)	483, 522
HgaI	GACGC	2 cut(s)	85, 327
Hin1II	CATG	5 cut(s)	25, 175, 247, 262, 432
HincII	GTYRAC	2 cut(s)	13, 342
HindII	GTYRAC	2 cut(s)	13, 342
HinfI	GANTC	3 cut(s)	45, 233, 397
HpaII	CCGG	2 cut(s)	483, 522
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	3 cut(s)	13, 120, 342
Hpy188I	TCNGA	4 cut(s)	137, 190, 218, 563
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	3 cut(s)	13, 120, 342
Hpy99I	CGWCG	3 cut(s)	281, 316, 563
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	74, 321, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	1 cut(s)	501
Hsp92II	CATG	5 cut(s)	25, 175, 247, 262, 432
Kzo9I	GATC	3 cut(s)	174, 190, 489
LmnI	GCTCC	5 cut(s)	134, 160, 222, 554, 573
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	152, 505
MalI	GATC	3 cut(s)	176, 192, 491
MboI	GATC	3 cut(s)	174, 190, 489
MboII	GAAGA	3 cut(s)	48, 97, 545
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	248
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	2 cut(s)	227, 391
MmeI	TCCRAC	1 cut(s)	541
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	2 cut(s)	20, 257
Msp20I	TGGCCA	1 cut(s)	248
MspI	CCGG	2 cut(s)	483, 522
MspR9I	CCNGG	3 cut(s)	238, 331, 530
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	3 cut(s)	238, 331, 530
MwoI	GCNNNNNNNGC	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	3 cut(s)	174, 190, 489
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	5 cut(s)	25, 175, 247, 262, 432
NlaIV	GGNNCC	6 cut(s)	130, 328, 358, 359, 418, 556
NmuCI	GTSAC	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	458
PleI	GAGTC	2 cut(s)	227, 391
PpsI	GAGTC	2 cut(s)	227, 391
PpuMI	RGGWCCY	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	417
Psp6I	CCWGG	3 cut(s)	236, 329, 528
PspGI	CCWGG	3 cut(s)	236, 329, 528
PspN4I	GGNNCC	6 cut(s)	130, 328, 358, 359, 418, 556
PspOMI	GGGCCC	1 cut(s)	356
PspPI	GGNCC	5 cut(s)	208, 356, 357, 417, 432
PspPPI	RGGWCCY	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	2 cut(s)	20, 257
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	457
Sau3AI	GATC	3 cut(s)	174, 190, 489
Sau96I	GGNCC	5 cut(s)	208, 356, 357, 417, 432
SchI	GAGTC	2 cut(s)	227, 391
ScrFI	CCNGG	3 cut(s)	238, 331, 530
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	8 cut(s)	73, 242, 370, 422, 441, 502, 507, 578
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	208, 417
SmiMI	CAYNNNNRTG	2 cut(s)	20, 257
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	5 cut(s)	168, 211, 361, 456, 581
SspMI	CTAG	1 cut(s)	335
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	3 cut(s)	236, 329, 528
StyI	CCWWGG	3 cut(s)	204, 270, 428
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	4 cut(s)	144, 314, 443, 465
TauI	GCSGC	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	3 cut(s)	106, 127, 271
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspGWI	ACGGA	2 cut(s)	121, 567
TspRI	CASTG	3 cut(s)	106, 127, 271
VpaK11BI	GGWCC	2 cut(s)	208, 417
XagI	CCTNNNNNAGG	1 cut(s)	533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.