Rroxscaffold_2G00131010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000782
Physical Location & Seq
Reverse (-)
67511233 .. 67511870
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131010.1

Sequence Viewer

Length: 204 bp
ATGGGCACAGTTGACATGGGAGGCAGTGAGGCACGCCGATTCGAAGCCTCTTCCTCTTCCATTAAACCACCTGCAGAACAGAGACAACCGGTCGGCGTCGGTGTCTTCGCCTCCGTCTTCGCTTCCGATCCCGACACCCCCTTGGTCCGCCTCGGATGGAGCAAGCAGGACTCCAAGGTACATGGCCACCACCATCATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.15

Weight (kDa)

6.97

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 180
AgeI ACCGGT 1 cut(s) 88
AhdI GACNNNNNGTC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 122
AoxI GGCC 1 cut(s) 184
AsiGI ACCGGT 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 42
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 186
BbsI GAAGAC 2 cut(s) 97, 109
BccI CCATC 2 cut(s) 150, 201
BcoDI GTCTC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 145
BpiI GAAGAC 2 cut(s) 97, 109
Bpu14I TTCGAA 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 141, 151, 174
BsaWI WCCGGW 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 88
BseDI CCNNGG 3 cut(s) 141, 151, 174
BseGI GGATG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 186
BshTI ACCGGT 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 1 cut(s) 186
Bsp119I TTCGAA 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 141, 151, 174
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 141, 174
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 55, 61
BstACI GRCGYC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 34, 164
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 127
BstMCI CGRYCG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 2 cut(s) 97, 109
BstXI CCANNNNNNTGG 1 cut(s) 197
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 34, 164
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 179
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 3 cut(s) 16, 182, 197
CviJI RGCY 2 cut(s) 47, 186
CviKI_1 RGCY 2 cut(s) 47, 186
CviQI GTAC 1 cut(s) 179
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
DriI GACNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 2 cut(s) 55, 61
Eam1105I GACNNNNNGTC 1 cut(s) 89
EarI CTCTTC 2 cut(s) 55, 61
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 2 cut(s) 141, 174
Eco47I GGWCC 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 141, 174
ErhI CCWWGG 2 cut(s) 141, 174
FaeI CATG 3 cut(s) 19, 185, 200
FaiI YATR 3 cut(s) 17, 183, 198
FatI CATG 3 cut(s) 15, 181, 196
FokI GGATG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 3 cut(s) 19, 185, 200
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 2 cut(s) 39, 170
HpaII CCGG 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 127, 155
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 3 cut(s) 19, 185, 200
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 3 cut(s) 84, 102, 152
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 4 cut(s) 42, 48, 97, 109
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 186
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 6 cut(s) 14, 22, 58, 64, 121, 161
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 1 cut(s) 89
NdeII GATC 1 cut(s) 127
NlaIII CATG 3 cut(s) 19, 185, 200
NspV TTCGAA 1 cut(s) 42
PaqCI CACCTGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 39
PinAI ACCGGT 1 cut(s) 88
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 76
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 164
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 73, 180
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 42
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 195
SsiI CCGC 1 cut(s) 148
StyI CCWWGG 2 cut(s) 141, 174
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 42
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.