Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012350.1

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

3365 .. 3975

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012350.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggaccaaggtccacctgcaccaagccactacggtgcgtcttggacatgggaggcagtgaggcacgattggaagcctcttccattaaaccggccacctgcagaacagagacaaccggtcggcgtcggtgtctacgcctccatctccgctgacggctccgtcagagtgttcgacctgcctgacaaggagcattccgcgatgatctacgagagttccgatcccgacacccccttggtccgcctcggatggagcaagcaggactccaggtacatggccaccaccatcgtggatagcgccaaggccgtcgtcctcgacatccgctttcctgctcatccggtcgtcgagttgcagaggacgactgcactgccggggacgactttgccaccggaaagatcggtgaagccgaggttaccgccttaccgggggcgtggccggtggcctggaagagggtggtggggaggacggagccgtcggagattttggggagcttggcggggtcgtagtagtcgcggcgagtttctggccgatgccggcgaggccgatatatatatatatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

186

Amino Acids

20.95

Weight (kDa)

9.83

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	25, 106
AasI	GACNNNNNNGTC	2 cut(s)	158, 468
Acc36I	ACCTGC	3 cut(s)	25, 106, 183
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	197, 510
AciI	CCGC	7 cut(s)	147, 195, 238, 319, 413, 493, 510
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	4 cut(s)	92, 273, 430, 522
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	422, 446
AgeI	ACCGGT	1 cut(s)	115
AhdI	GACNNNNNGTC	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	263, 439
AleI	CACNNNNGTG	2 cut(s)	33, 284
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	7 cut(s)	92, 273, 300, 430, 437, 522, 537
AsiGI	ACCGGT	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	3 cut(s)	4, 11, 235
AsuC2I	CCSGG	2 cut(s)	369, 422
AsuHPI	GGTGA	1 cut(s)	409
AvaII	GGWCC	3 cut(s)	4, 11, 235
BalI	TGGCCA	1 cut(s)	275
BccI	CCATC	3 cut(s)	149, 240, 290
BceAI	ACGGC	3 cut(s)	169, 287, 453
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	2 cut(s)	265, 441
BcnI	CCSGG	2 cut(s)	369, 422
BcoDI	GTCTC	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	297
BfuAI	ACCTGC	3 cut(s)	25, 106, 183
BglI	GCCNNNNNGGC	1 cut(s)	536
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	4 cut(s)	265, 369, 422, 441
Bme18I	GGWCC	3 cut(s)	4, 11, 235
BmeRI	GACNNNNNGTC	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	4, 11, 235
BmiI	GGNNCC	2 cut(s)	157, 467
BmrFI	CCNGG	4 cut(s)	265, 369, 422, 441
BmsI	GCATC	1 cut(s)	517
BoxI	GACNNNNGTC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	247
BpuMI	CCSGG	2 cut(s)	369, 422
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	7 cut(s)	7, 231, 241, 297, 368, 404, 421
BsaWI	WCCGGW	3 cut(s)	115, 334, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 446
Bse118I	RCCGGY	4 cut(s)	90, 115, 432, 530
BseBI	CCWGG	2 cut(s)	265, 441
BseDI	CCNNGG	7 cut(s)	7, 231, 241, 297, 368, 404, 421
BseGI	GGATG	3 cut(s)	251, 315, 331
BseLI	CCNNNNNNNGG	2 cut(s)	422, 446
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	2 cut(s)	197, 510
Bsh1285I	CGRYCG	2 cut(s)	120, 339
BshFI	GGCC	7 cut(s)	94, 275, 302, 432, 439, 524, 539
BshTI	ACCGGT	1 cut(s)	115
BsiEI	CGRYCG	2 cut(s)	120, 339
BsiSI	CCGG	8 cut(s)	91, 116, 335, 368, 386, 421, 433, 531
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	422, 446
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	7 cut(s)	94, 275, 302, 432, 439, 524, 539
Bsp143I	GATC	3 cut(s)	201, 217, 392
BspACI	CCGC	7 cut(s)	147, 195, 238, 319, 413, 493, 510
BspANI	GGCC	7 cut(s)	94, 275, 302, 432, 439, 524, 539
BspFNI	CGCG	2 cut(s)	197, 510
BspLI	GGNNCC	2 cut(s)	157, 467
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	3 cut(s)	25, 106, 183
BspPI	GGATC	1 cut(s)	212
BsrFI	RCCGGY	4 cut(s)	90, 115, 432, 530
BssAI	RCCGGY	4 cut(s)	90, 115, 432, 530
BssECI	CCNNGG	7 cut(s)	7, 231, 241, 297, 368, 404, 421
BssMI	GATC	3 cut(s)	201, 217, 392
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	3 cut(s)	7, 231, 297
Bst2UI	CCWGG	2 cut(s)	265, 441
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	84, 439
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	254, 532
BstEII	GGTNACC	1 cut(s)	408
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstF5I	GGATG	3 cut(s)	251, 315, 331
BstFNI	CGCG	2 cut(s)	197, 510
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	3 cut(s)	204, 220, 395
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	3 cut(s)	201, 217, 392
BstMCI	CGRYCG	2 cut(s)	120, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	2 cut(s)	265, 441
BstPAI	GACNNNNGTC	1 cut(s)	9
BstPI	GGTNACC	1 cut(s)	408
BstSCI	CCNGG	4 cut(s)	263, 367, 420, 439
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	2 cut(s)	197, 510
BstXI	CCANNNNNNTGG	2 cut(s)	271, 286
BsuRI	GGCC	7 cut(s)	94, 275, 302, 432, 439, 524, 539
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	251, 315, 331
BtsI	GCAGTG	2 cut(s)	63, 362
BtsIMutI	CAGTG	2 cut(s)	63, 362
BveI	ACCTGC	3 cut(s)	25, 106, 183
Cac8I	GCNNGC	2 cut(s)	254, 532
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	4 cut(s)	90, 115, 432, 530
Cfr13I	GGNCC	3 cut(s)	4, 11, 235
CseI	GACGC	2 cut(s)	27, 112
Csp6I	GTAC	1 cut(s)	268
CspAI	ACCGGT	1 cut(s)	115
CviAII	CATG	2 cut(s)	48, 271
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	3 cut(s)	203, 219, 394
DpnII	GATC	3 cut(s)	201, 217, 392
DrdI	GACNNNNNNGTC	2 cut(s)	158, 468
DriI	GACNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	2 cut(s)	158, 468
EaeI	YGGCCR	4 cut(s)	92, 273, 430, 522
Eam1104I	CTCTTC	2 cut(s)	84, 439
Eam1105I	GACNNNNNGTC	1 cut(s)	116
EarI	CTCTTC	2 cut(s)	84, 439
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	3 cut(s)	7, 231, 297
Eco47I	GGWCC	3 cut(s)	4, 11, 235
Eco91I	GGTNACC	1 cut(s)	408
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoO65I	GGTNACC	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	263, 439
EcoT14I	CCWWGG	3 cut(s)	7, 231, 297
ErhI	CCWWGG	3 cut(s)	7, 231, 297
FaeI	CATG	2 cut(s)	51, 274
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	2 cut(s)	47, 270
FauI	CCCGC	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	3 cut(s)	258, 302, 318
Fsp4HI	GCNGC	1 cut(s)	511
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	511
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	7 cut(s)	94, 275, 302, 432, 439, 524, 539
HapII	CCGG	8 cut(s)	91, 116, 335, 368, 386, 421, 433, 531
HgaI	GACGC	2 cut(s)	27, 112
HhaI	GCGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	51, 274
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	8 cut(s)	91, 116, 335, 368, 386, 421, 433, 531
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	14, 133
Hpy188I	TCNGA	4 cut(s)	164, 217, 245, 474
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	14, 133
Hpy99I	CGWCG	4 cut(s)	128, 308, 344, 474
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	4 cut(s)	20, 101, 349, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	51, 274
HspAI	GCGC	1 cut(s)	294
KroI	GCCGGC	1 cut(s)	530
KroNI	GCCGGC	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	201, 217, 392
LmnI	GCTCC	5 cut(s)	161, 187, 249, 465, 485
LweI	GCATC	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	3 cut(s)	203, 219, 394
MboI	GATC	3 cut(s)	201, 217, 392
MboII	GAAGA	2 cut(s)	71, 456
MlsI	TGGCCA	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	452
Mox20I	TGGCCA	1 cut(s)	275
MroNI	GCCGGC	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	2 cut(s)	33, 284
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	8 cut(s)	91, 116, 335, 368, 386, 421, 433, 531
MspR9I	CCNGG	4 cut(s)	265, 369, 422, 441
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	265, 441
MvnI	CGCG	2 cut(s)	197, 510
MwoI	GCNNNNNNNGC	1 cut(s)	536
NaeI	GCCGGC	1 cut(s)	532
NciI	CCSGG	2 cut(s)	369, 422
NdeII	GATC	3 cut(s)	201, 217, 392
NgoMIV	GCCGGC	1 cut(s)	530
NlaIII	CATG	2 cut(s)	51, 274
NlaIV	GGNNCC	2 cut(s)	157, 467
NmeAIII	GCCGAG	1 cut(s)	429
OliI	CACNNNNGTG	2 cut(s)	33, 284
PaqCI	CACCTGC	2 cut(s)	25, 106
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 401
PctI	GAATGC	1 cut(s)	190
PdiI	GCCGGC	1 cut(s)	532
PinAI	ACCGGT	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PshAI	GACNNNNGTC	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	263, 439
PspEI	GGTNACC	1 cut(s)	408
PspGI	CCWGG	2 cut(s)	263, 439
PspN4I	GGNNCC	2 cut(s)	157, 467
PspPI	GGNCC	3 cut(s)	4, 11, 235
PstI	CTGCAG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	33, 284
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	3 cut(s)	201, 217, 392
Sau96I	GGNCC	3 cut(s)	4, 11, 235
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	4 cut(s)	265, 369, 422, 441
SetI	ASST	7 cut(s)	13, 19, 100, 177, 269, 410, 490
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	3 cut(s)	4, 11, 235
SmiMI	CAYNNNNRTG	2 cut(s)	33, 284
SsiI	CCGC	7 cut(s)	147, 195, 238, 319, 413, 493, 510
StyD4I	CCNGG	4 cut(s)	263, 367, 420, 439
StyI	CCWWGG	3 cut(s)	7, 231, 297
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	3 cut(s)	171, 312, 342
TauI	GCSGC	1 cut(s)	513
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	2 cut(s)	63, 369
TspGWI	ACGGA	2 cut(s)	148, 478
TspRI	CASTG	2 cut(s)	63, 369
VpaK11BI	GGWCC	3 cut(s)	4, 11, 235
XagI	CCTNNNNNAGG	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.