Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Forward (+)

16246240 .. 16246494

Gene Structure 255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG132600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGCACAGTTGACATGGGAGGCAGTGAGGCACGCCAATTCGAAGCCTCTTCCATTAAACCACCTGTAGAACAGAGACAACCGGTCGGCGTCGGTGTCTTCGCCTCCGTCTTCGCTTCCGATCCCGACACCCCCTTGGTCCGCCTCGAATGGAGCAAGCAGGACTCCAGGTACATGGCCACCACCATCATGGATAGCGCCAAGGCCGTCGTCCTCGACATCCGCTTCCCTGCTCATCCGGTCGTCGAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

84

Amino Acids

9.15

Weight (kDa)

4.9

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	142, 223
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	173
AgeI	ACCGGT	1 cut(s)	82
AhdI	GACNNNNNGTC	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	2 cut(s)	177, 204
AsiGI	ACCGGT	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	91, 103
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	139
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	91, 103
BpmI	CTGGAG	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	135, 201
BsaWI	WCCGGW	2 cut(s)	82, 238
Bse118I	RCCGGY	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	135, 201
BseGI	GGATG	2 cut(s)	219, 235
BseSI	GKGCMC	1 cut(s)	8
Bsh1285I	CGRYCG	2 cut(s)	87, 243
BshFI	GGCC	2 cut(s)	179, 206
BshTI	ACCGGT	1 cut(s)	82
BsiEI	CGRYCG	2 cut(s)	87, 243
BsiSI	CCGG	2 cut(s)	83, 239
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	179, 206
Bsp119I	TTCGAA	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	2 cut(s)	142, 223
BspANI	GGCC	2 cut(s)	179, 206
BspPI	GGATC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	135, 201
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	135, 201
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	34, 158
BstF5I	GGATG	2 cut(s)	219, 235
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	121
BstMCI	CGRYCG	2 cut(s)	87, 243
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	91, 103
BstXI	CCANNNNNNTGG	2 cut(s)	175, 190
BsuRI	GGCC	2 cut(s)	179, 206
BtsCI	GGATG	2 cut(s)	219, 235
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	34, 158
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	172
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	3 cut(s)	16, 175, 190
CviJI	RGCY	3 cut(s)	47, 179, 206
CviKI_1	RGCY	3 cut(s)	47, 179, 206
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DriI	GACNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	55
Eam1105I	GACNNNNNGTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	135, 201
Eco47I	GGWCC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	135, 201
ErhI	CCWWGG	2 cut(s)	135, 201
FaeI	CATG	3 cut(s)	19, 178, 193
FaiI	YATR	3 cut(s)	17, 176, 191
FatI	CATG	3 cut(s)	15, 174, 189
FokI	GGATG	2 cut(s)	206, 222
GlaI	GCGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	179, 206
HapII	CCGG	2 cut(s)	83, 239
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	19, 178, 193
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	83, 239
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	3 cut(s)	95, 212, 248
HpyCH4III	ACNGT	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	19, 178, 193
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	6 cut(s)	78, 96, 146, 154, 181, 243
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	42, 91, 103
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	14, 22, 58, 115, 155, 224
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	2 cut(s)	83, 239
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	3 cut(s)	19, 178, 193
NspV	TTCGAA	1 cut(s)	42
PinAI	ACCGGT	1 cut(s)	82
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	2 cut(s)	67, 173
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	42
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	142, 223
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	135, 201
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	4 cut(s)	42, 147, 216, 246
TasI	AATT	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.