Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

29687676 .. 29701943

Gene Structure 14268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGTCAGAAACTATGATGAGGGGAAGAAAAAGATTATTAATACAGTGTGCTGCTGGAAGTAATGAAAGTAAAGACACAATTGAGCAAAAGAGAACTAGGAGAACTACACGTAATCGTGTTTTTTTTGGTGGAGATGAATATGATCGAATTAACTCACAGAGATGGAAAACGATGTTTGATCCTCAAATTGCTGAAGCATCAAATGTATGTGAGAATGTCACTGGAATTGAACATTCTGACAAACAATGTAGAGCTAACGACCAAAATGTTGGTGCAACTCTAAATGAAGATCCATTTATGGGTCTAGAAGATCCTAAACCAGGACATATAATAGCTAATCTTGCAAATGCCTATTATATGAATGGTGATCATAGAAGTTCCAGCAAGTGCTTGGAGAAGCAATACATTGAAACTGAGCAAACATTTGTCATTATGATGACACCATCCAGACGTGGCACTTCTGAATTTTGTAGTAAATTAATATTCGTCAAGGCTCCGGTATTAGATGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

172

Amino Acids

19.54

Weight (kDa)

6.83

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	176, 287, 308
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	302, 323
AflIII	ACRYGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	233, 413
AjiI	CACGTC	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	2 cut(s)	257, 338
AluI	AGCT	2 cut(s)	257, 338
AlwI	GGATC	3 cut(s)	176, 287, 308
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	467
AseI	ATTAAT	2 cut(s)	41, 482
AsuHPI	GGTGA	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	3 cut(s)	159, 454, 503
BciT130I	CCWGG	1 cut(s)	324
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	2 cut(s)	99, 308
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 323
Bse1I	ACTGG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	302, 323
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	302, 323
Bsp143I	GATC	5 cut(s)	145, 181, 292, 313, 370
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	3 cut(s)	176, 287, 308
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	5 cut(s)	145, 181, 292, 313, 370
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	417
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	446
BstKTI	GATC	5 cut(s)	148, 184, 295, 316, 373
BstMBI	GATC	5 cut(s)	145, 181, 292, 313, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	292, 313
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	2 cut(s)	292, 313
BtrI	CACGTC	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	53, 222
CviJI	RGCY	3 cut(s)	257, 338, 497
CviKI_1	RGCY	3 cut(s)	257, 338, 497
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	5 cut(s)	147, 183, 294, 315, 372
DpnII	GATC	5 cut(s)	145, 181, 292, 313, 370
Eco57I	CTGAAG	1 cut(s)	216
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	99, 308
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	500
Hin1I	GRCGYC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	1 cut(s)	380
Hpy188I	TCNGA	3 cut(s)	10, 241, 466
Hpy188III	TCNNGA	2 cut(s)	308, 450
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	2 cut(s)	112, 454
HpyCH4V	TGCA	2 cut(s)	278, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	2 cut(s)	112, 454
Hsp92I	GRCGYC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	145, 181, 292, 313, 370
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	7 cut(s)	42, 210, 309, 336, 397, 463, 513
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	99, 308
MaeII	ACGT	2 cut(s)	112, 454
MaeIII	GTNAC	2 cut(s)	220, 512
MalI	GATC	5 cut(s)	147, 183, 294, 315, 372
MboI	GATC	5 cut(s)	145, 181, 292, 313, 370
MboII	GAAGA	3 cut(s)	39, 302, 323
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	2 cut(s)	292, 313
MluCI	AATT	6 cut(s)	81, 150, 189, 228, 467, 479
MnlI	CCTC	2 cut(s)	15, 195
MseI	TTAA	3 cut(s)	41, 153, 482
MslI	CAYNNNNRTG	2 cut(s)	163, 437
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	5 cut(s)	145, 181, 292, 313, 370
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	2 cut(s)	220, 512
PkrI	GCNGC	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	113
PshBI	ATTAAT	2 cut(s)	41, 482
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	498
PsuI	RGATCY	2 cut(s)	292, 313
RseI	CAYNNNNRTG	2 cut(s)	163, 437
SaqAI	TTAA	3 cut(s)	41, 153, 482
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	5 cut(s)	145, 181, 292, 313, 370
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	4 cut(s)	115, 259, 340, 457
SfaNI	GCATC	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	163, 437
Sse9I	AATT	6 cut(s)	81, 150, 189, 228, 467, 479
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	2 cut(s)	99, 308
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	2 cut(s)	115, 457
TaqI	TCGA	1 cut(s)	148
TasI	AATT	6 cut(s)	81, 150, 189, 228, 467, 479
Tru1I	TTAA	3 cut(s)	41, 153, 482
Tru9I	TTAA	3 cut(s)	41, 153, 482
TscAI	CASTG	2 cut(s)	53, 229
TseFI	GTSAC	2 cut(s)	220, 512
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	2 cut(s)	220, 512
TspDTI	ATGAA	4 cut(s)	81, 153, 303, 377
TspRI	CASTG	2 cut(s)	53, 229
VspI	ATTAAT	2 cut(s)	41, 482
XagI	CCTNNNNNAGG	1 cut(s)	321
XapI	RAATTY	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XspI	CTAG	2 cut(s)	99, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.