RchiOBHm_Chr1g0331401

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000782
Physical Location & Seq
Forward (+)
21272508 .. 21272796
289 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56042

Sequence Viewer

Length: 192 bp
ATGCAAAAGAATTTTGGCACCATCTTTCTGCAGCTGTTCCTTTGCCTATTGCTCAGTGTCGTCTTGCTTGCTTATTCTTATTCAGTTATAAACGATTTTAGGAGCAGTTTGCAGCCAGATTATTCAACTGTCTTGAATTCAGGTATATATATTTTCAAAGAATGTGAATTTTCTATATTCTTAGTACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.28

Weight (kDa)

4.78

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 17
AcsI RAATTY 3 cut(s) 10, 136, 167
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 3 cut(s) 126, 136, 157
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 31, 112
ApoI RAATTY 3 cut(s) 10, 136, 167
BanI GGYRCC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 43, 124
BccI CCATC 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 29
BisI GCNGC 2 cut(s) 32, 113
BlsI GCNGC 2 cut(s) 33, 114
BmiI GGNNCC 1 cut(s) 19
BseMII CTCAG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 43, 124
BshNI GGYRCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 130, 189
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 53, 181
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 43, 124
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 2 cut(s) 34, 115
CviKI_1 RGCY 2 cut(s) 34, 115
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 53, 181
EcoRI GAATTC 1 cut(s) 136
FaiI YATR 5 cut(s) 89, 146, 148, 150, 176
Fnu4HI GCNGC 2 cut(s) 32, 113
Fsp4HI GCNGC 2 cut(s) 32, 113
FspEI CC 6 cut(s) 34, 53, 59, 85, 126, 129
GluI GCNGC 2 cut(s) 32, 113
Hpy188III TCNNGA 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 130, 189
HpyCH4V TGCA 3 cut(s) 4, 31, 112
HpyF3I CTNAG 2 cut(s) 53, 181
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 2 cut(s) 126, 129
Lsp1109I GCAGC 2 cut(s) 43, 124
MluCI AATT 3 cut(s) 10, 136, 167
MspA1I CMGCKG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 33, 114
PsiI TTATAA 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SatI GCNGC 2 cut(s) 32, 113
SetI ASST 2 cut(s) 36, 145
SfcI CTRYAG 1 cut(s) 29
SgeI CNNG 5 cut(s) 76, 80, 128, 145, 153
Sse9I AATT 3 cut(s) 10, 136, 167
TaaI ACNGT 2 cut(s) 130, 189
TasI AATT 3 cut(s) 10, 136, 167
TatI WGTACW 1 cut(s) 184
TscAI CASTG 1 cut(s) 61
TseI GCWGC 2 cut(s) 31, 112
TspRI CASTG 1 cut(s) 61
XapI RAATTY 3 cut(s) 10, 136, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.