Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Forward (+)

16260777 .. 16278124

Gene Structure 17348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG132700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAAGATAAAAGTGTGAGGAAAGGAATGAAGAGATTATTACTGCCGTCTGCTGCTGAAAGAAGTGGATCTGATCCTCTTATCTCTAAGAGGTTTAGAGCAATGTTGCGTTCGCACATCGTTGAAACATTGAATGAACCTCAGAATGTAGATGCATTTGAACATAATGAGAATGAAGTTAGAGGTGATTATCAGCATACTGTTGCACCTCTCAGCAAAGATGCAGAGATTGGACGAAAGCGCAAATTGAGGAGAATGAAGACATTGTTAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTGACGATAATTTGTTTCATTCAGACATTGTTGAAGGATCGAGTCAACGTGACGATCAATTTAGAAATGATGAATTACTGAATGTTGTTACCGAGGATGGTCAAGTGGCACCAAAGAGTGTGATGAGGCGAATGAAGAAATTGTTATTCAAGTCTTCTGATAAAAATTACAAAATTGGAGAGACAATTGAGCAAGTACGTATAGCTAAAGACATCATGAAGAAGTGGTCTAAACCACATGAGATACCATTCAGTACTACTGAGTTGGCTGAATTCTGGTCTAAAATCAGTATGCATGGAAGTCTTACGTCACGACGAGTGGAGGGATTCAAGACCTTACTGAAAGCTGCGGTTGGTGTCCCCTTGATAACTATTGAAGCATGGCTTCAGTTGGTCCCAGAACTAGGGTATGATGCAATTTCTAGTGTGCCACGTGGAGAGATTTGCCGAAGAGGAAAAACCTTGTTTTCTGGTTACCACATACAAGATCTAACTAAAGATGGGCTGTTGGAATTGCCGGAGGGGTTGGAGTCACCGTGGCAGTTTCTCAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATCTGACTGATGACTACAAATCATTGTGTCAAAACCTGAAGGCAAATACATTTTGGATGAGCTCAATAGTACGGGTCAGAAACAACAAGTATGTGCTCCTTCCTGATTCACGCTATGTTGCTGAAGTTTATTCATCTGACTTAAAAGACATTTATGTTGCAGCTTCGAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

360

Amino Acids

41.23

Weight (kDa)

8.25

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	433
AciI	CCGC	1 cut(s)	674
AclWI	GGATC	3 cut(s)	68, 76, 370
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	3 cut(s)	695, 965, 1050
AcvI	CACGTG	1 cut(s)	758
AfaI	GTAC	3 cut(s)	522, 580, 978
AfiI	CCNNNNNNNGG	1 cut(s)	728
AgsI	TTSAA	7 cut(s)	125, 133, 161, 359, 475, 655, 701
AluBI	AGCT	5 cut(s)	530, 671, 899, 969, 1070
AluI	AGCT	5 cut(s)	530, 671, 899, 969, 1070
Alw21I	GWGCWC	2 cut(s)	971, 1005
Alw26I	GTCTC	2 cut(s)	299, 500
AlwI	GGATC	3 cut(s)	68, 76, 370
AoxI	GGCC	1 cut(s)	879
ApeKI	GCWGC	4 cut(s)	53, 671, 896, 1067
ApoI	RAATTY	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	718
AsuHPI	GGTGA	3 cut(s)	197, 314, 849
AvaII	GGWCC	1 cut(s)	718
BanI	GGYRCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	971
BbrPI	CACGTG	1 cut(s)	758
BbsI	GAAGAC	2 cut(s)	266, 471
Bbv12I	GWGCWC	2 cut(s)	971, 1005
BbvI	GCAGC	4 cut(s)	40, 658, 908, 1079
BccI	CCATC	2 cut(s)	416, 818
BceAI	ACGGC	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	299, 500
BfaI	CTAG	2 cut(s)	728, 747
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	4 cut(s)	54, 672, 897, 1068
BlpI	GCTNAGC	1 cut(s)	900
BlsI	GCNGC	4 cut(s)	55, 673, 898, 1069
BmcAI	AGTACT	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	718
BmgT120I	GGNCC	1 cut(s)	718
BmiI	GGNNCC	2 cut(s)	435, 720
BmrI	ACTGGG	1 cut(s)	901
BmsI	GCATC	4 cut(s)	142, 211, 727, 913
BmuI	ACTGGG	1 cut(s)	901
BpiI	GAAGAC	2 cut(s)	266, 471
Bpu1102I	GCTNAGC	1 cut(s)	900
BsaAI	YACGTR	2 cut(s)	524, 758
BsaJI	CCNNGG	3 cut(s)	417, 860, 882
BsaXI	ACNNNNNCTCC	2 cut(s)	845, 875
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse1I	ACTGG	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	417, 860, 882
BseGI	GGATG	2 cut(s)	427, 969
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	5 cut(s)	155, 226, 576, 886, 891
BseNI	ACTGG	1 cut(s)	896
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	4 cut(s)	40, 658, 908, 1079
BshFI	GGCC	1 cut(s)	881
BshNI	GGYRCC	1 cut(s)	433
BsiHKAI	GWGCWC	2 cut(s)	971, 1005
BsiSI	CCGG	1 cut(s)	842
BslFI	GGGAC	2 cut(s)	668, 704
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	2 cut(s)	299, 500
BsmFI	GGGAC	2 cut(s)	668, 704
BsnI	GGCC	1 cut(s)	881
Bsp1286I	GDGCHC	2 cut(s)	971, 1005
Bsp143I	GATC	5 cut(s)	68, 73, 362, 379, 811
Bsp1720I	GCTNAGC	1 cut(s)	900
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	1 cut(s)	881
BspCNI	CTCAG	5 cut(s)	154, 225, 577, 885, 892
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	435, 720
BspPI	GGATC	3 cut(s)	68, 76, 370
BspT107I	GGYRCC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	896
BssECI	CCNNGG	3 cut(s)	417, 860, 882
BssMI	GATC	5 cut(s)	68, 73, 362, 379, 811
BssT1I	CCWWGG	1 cut(s)	882
Bst4CI	ACNGT	3 cut(s)	202, 276, 861
Bst6I	CTCTTC	2 cut(s)	26, 769
BstBAI	YACGTR	2 cut(s)	524, 758
BstDEI	CTNAG	6 cut(s)	87, 141, 212, 585, 872, 900
BstDSI	CCRYGG	1 cut(s)	860
BstEII	GGTNACC	1 cut(s)	797
BstF5I	GGATG	2 cut(s)	427, 969
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	5 cut(s)	71, 76, 365, 382, 814
BstMAI	GTCTC	2 cut(s)	299, 500
BstMBI	GATC	5 cut(s)	68, 73, 362, 379, 811
BstPI	GGTNACC	1 cut(s)	797
BstSNI	TACGTA	1 cut(s)	524
BstV1I	GCAGC	4 cut(s)	40, 658, 908, 1079
BstV2I	GAAGAC	2 cut(s)	266, 471
BstX2I	RGATCY	2 cut(s)	68, 811
BstYI	RGATCY	2 cut(s)	68, 811
BsuRI	GGCC	1 cut(s)	881
BtgI	CCRYGG	1 cut(s)	860
BtsCI	GGATG	2 cut(s)	427, 969
CciI	TCATGA	1 cut(s)	540
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	718
Csp6I	GTAC	3 cut(s)	521, 579, 977
CviAII	CATG	4 cut(s)	541, 563, 620, 705
CviJI	RGCY	9 cut(s)	530, 593, 671, 709, 829, 881, 899, 969, 1070
CviKI_1	RGCY	9 cut(s)	530, 593, 671, 709, 829, 881, 899, 969, 1070
CviQI	GTAC	3 cut(s)	521, 579, 977
DdeI	CTNAG	6 cut(s)	87, 141, 212, 585, 872, 900
DpnI	GATC	5 cut(s)	70, 75, 364, 381, 813
DpnII	GATC	5 cut(s)	68, 73, 362, 379, 811
Eam1104I	CTCTTC	2 cut(s)	26, 769
EarI	CTCTTC	2 cut(s)	26, 769
Ecl136II	GAGCTC	1 cut(s)	969
Eco105I	TACGTA	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	882
Eco147I	AGGCCT	1 cut(s)	881
Eco24I	GRGCYC	1 cut(s)	971
Eco47I	GGWCC	1 cut(s)	718
Eco53kI	GAGCTC	1 cut(s)	969
Eco57I	CTGAAG	3 cut(s)	695, 965, 1050
Eco72I	CACGTG	1 cut(s)	758
Eco91I	GGTNACC	1 cut(s)	797
EcoICRI	GAGCTC	1 cut(s)	969
EcoO65I	GGTNACC	1 cut(s)	797
EcoRI	GAATTC	1 cut(s)	596
EcoT14I	CCWWGG	1 cut(s)	882
EcoT22I	ATGCAT	2 cut(s)	157, 621
EcoT38I	GRGCYC	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	4 cut(s)	544, 566, 623, 708
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FaqI	GGGAC	2 cut(s)	668, 704
FatI	CATG	4 cut(s)	540, 562, 619, 704
Fnu4HI	GCNGC	4 cut(s)	54, 672, 897, 1068
FokI	GGATG	2 cut(s)	434, 976
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	4 cut(s)	54, 672, 897, 1068
FspBI	CTAG	2 cut(s)	728, 747
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	4 cut(s)	54, 672, 897, 1068
HaeIII	GGCC	1 cut(s)	881
HapII	CCGG	1 cut(s)	842
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	544, 566, 623, 708
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	371
HindII	GTYRAC	1 cut(s)	371
HinfI	GANTC	4 cut(s)	367, 651, 854, 1013
HpaII	CCGG	1 cut(s)	842
HphI	GGTGA	3 cut(s)	197, 314, 849
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	8 cut(s)	73, 144, 349, 484, 875, 912, 986, 1045
Hpy188III	TCNNGA	4 cut(s)	541, 636, 655, 1010
Hpy8I	GTNNAC	1 cut(s)	371
Hpy99I	CGWCG	1 cut(s)	642
HpyAV	CCTTC	3 cut(s)	353, 940, 1016
HpyCH4III	ACNGT	3 cut(s)	202, 276, 861
HpyCH4IV	ACGT	4 cut(s)	373, 523, 632, 757
HpyCH4V	TGCA	7 cut(s)	155, 206, 224, 296, 619, 740, 1067
HpyF3I	CTNAG	6 cut(s)	87, 141, 212, 585, 872, 900
HpySE526I	ACGT	4 cut(s)	373, 523, 632, 757
Hsp92II	CATG	4 cut(s)	544, 566, 623, 708
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	5 cut(s)	68, 73, 362, 379, 811
LmnI	GCTCC	1 cut(s)	1008
LpnPI	CCDG	7 cut(s)	586, 735, 780, 855, 877, 956, 1023
Lsp1109I	GCAGC	4 cut(s)	40, 658, 908, 1079
LweI	GCATC	4 cut(s)	142, 211, 727, 913
MaeI	CTAG	2 cut(s)	728, 747
MaeII	ACGT	4 cut(s)	373, 523, 632, 757
MaeIII	GTNAC	5 cut(s)	374, 412, 633, 797, 855
MalI	GATC	5 cut(s)	70, 75, 364, 381, 813
MboI	GATC	5 cut(s)	68, 73, 362, 379, 811
MboII	GAAGA	8 cut(s)	17, 43, 271, 333, 471, 472, 556, 786
MfeI	CAATTG	3 cut(s)	297, 309, 510
MflI	RGATCY	2 cut(s)	68, 811
MhlI	GDGCHC	2 cut(s)	971, 1005
MlyI	GAGTC	2 cut(s)	376, 863
MmeI	TCCRAC	2 cut(s)	813, 831
Mph1103I	ATGCAT	2 cut(s)	157, 621
MseI	TTAA	1 cut(s)	1049
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	1 cut(s)	842
MunI	CAATTG	3 cut(s)	297, 309, 510
NdeII	GATC	5 cut(s)	68, 73, 362, 379, 811
NlaIII	CATG	4 cut(s)	544, 566, 623, 708
NlaIV	GGNNCC	2 cut(s)	435, 720
NmuCI	GTSAC	3 cut(s)	374, 633, 855
NsiI	ATGCAT	2 cut(s)	157, 621
PagI	TCATGA	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	881
PfeI	GAWTC	2 cut(s)	651, 1013
PkrI	GCNGC	4 cut(s)	55, 673, 898, 1069
PleI	GAGTC	2 cut(s)	375, 862
PmaCI	CACGTG	1 cut(s)	758
PmlI	CACGTG	1 cut(s)	758
PpsI	GAGTC	2 cut(s)	375, 862
Ppu21I	YACGTR	2 cut(s)	524, 758
Psp124BI	GAGCTC	1 cut(s)	971
PspCI	CACGTG	1 cut(s)	758
PspEI	GGTNACC	1 cut(s)	797
PspN4I	GGNNCC	2 cut(s)	435, 720
PspPI	GGNCC	1 cut(s)	718
PsuI	RGATCY	2 cut(s)	68, 811
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	3 cut(s)	522, 580, 978
RsaNI	GTAC	3 cut(s)	521, 579, 977
SacI	GAGCTC	1 cut(s)	971
SaqAI	TTAA	1 cut(s)	1049
SatI	GCNGC	4 cut(s)	54, 672, 897, 1068
Sau3AI	GATC	5 cut(s)	68, 73, 362, 379, 811
Sau96I	GGNCC	1 cut(s)	718
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	2 cut(s)	376, 863
SduI	GDGCHC	2 cut(s)	971, 1005
SfaNI	GCATC	4 cut(s)	142, 211, 727, 913
SinI	GGWCC	1 cut(s)	718
SnaBI	TACGTA	1 cut(s)	524
SseBI	AGGCCT	1 cut(s)	881
SsiI	CCGC	1 cut(s)	674
SspMI	CTAG	2 cut(s)	728, 747
SstI	GAGCTC	1 cut(s)	971
StuI	AGGCCT	1 cut(s)	881
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	3 cut(s)	202, 276, 861
TaiI	ACGT	4 cut(s)	376, 526, 635, 760
TaqI	TCGA	2 cut(s)	365, 1073
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	2 cut(s)	651, 1013
Tru1I	TTAA	1 cut(s)	1049
Tru9I	TTAA	1 cut(s)	1049
TseFI	GTSAC	3 cut(s)	374, 633, 855
TseI	GCWGC	4 cut(s)	53, 671, 896, 1067
Tsp45I	GTSAC	3 cut(s)	374, 633, 855
TspDTI	ATGAA	9 cut(s)	44, 150, 189, 272, 332, 411, 473, 557, 1029
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	1 cut(s)	596
XspI	CTAG	2 cut(s)	728, 747
ZrmI	AGTACT	1 cut(s)	580
Zsp2I	ATGCAT	2 cut(s)	157, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.