Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001128.1

Orthogroup ID

OG0000782

Physical Location & Seq

Genomic Coordinates Reverse (-)

11180 .. 11737

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001128.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggaccaaggtccacctgcaccaagccactacggtgcgtcttggacatgggaggcagtgaggcacgattcgaagcctcttccattaaaccggccacctgcagaacagagacaaccggtcggcgtcggtgtcttcgcctccatctccgctgacggctccgtcagagtgttcgacctgcctgacaaggagcattccgcgatgatctacgagagttccgatcccgacacccccttggtccgcctcggcgcggatggagcaagcaggactccagaggacgactgcactgccggggacgactttgccgccggaaagatcggtgaagctgaggttaccgccttaccgggggcgtggccggtggcctggaagagggtggtggggaggacggagccgtcggagattttggggagcttggcggggtcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

140

Amino Acids

14.76

Weight (kDa)

4.63

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320691 RchiOBHm_Chr1g0331401 RchiOBHm_Chr1g0334941 RchiOBHm_Chr2g0125261 RchiOBHm_Chr2g0147851 RchiOBHm_Chr4g0395441 RchiOBHm_Chr4g0413151 RchiOBHm_Chr5g0050891 RchiOBHm_Chr6g0258091 RchiOBHm_Chr7g0215701 RchiOBHm_Chr7g0221561 RchiOBHm_Chr7g0229561
rosa_laevigata	RLG00000017433 RLG00000022540 RLG00000029090 RLG00000029561
rosa_multiflora	Rmu_sc0001128.1_g000001 Rmu_sc0004686.1_g000001 Rmu_sc0004964.1_g000001 Rmu_sc0007623.1_g000010 Rmu_sc0008563.1_g000004 Rmu_sc0012350.1_g000001 Rmu_ssc0000111.1_g000017
rosa_roxburghii	Rroxscaffold_2G00077840 Rroxscaffold_2G00106100 Rroxscaffold_2G00131010 Rroxscaffold_3G00249900 Rroxscaffold_4G00279680 Rroxscaffold_4G00300030 Rroxscaffold_4G00316540 Rroxscaffold_5G00334920 Rroxscaffold_5G00337360
rosa_rugosa	Rorug01G0002700 Rorug01G0152900.1 Rorug02G0186900 Rorug04G0107700 Rorug07G0190200 Rorug07G0190200 Rorug07G0248700
rosa_samantha	Rh1AG192200 Rh1AG255100 Rh1BG112800 Rh1CG177400 Rh1DG097600 Rh2AG581700 Rh2CG409700 Rh2DG020900 Rh3BG369400 Rh3DG287800 Rh4CG033700 Rh4DG240100 Rh5AG170700 Rh5AG290100 Rh5BG226500 Rh5CG231500 Rh5DG288600 Rh6AG146100 Rh6BG137300 Rh6CG132600 Rh6CG132700 Rh6CG135200 Rh6DG120100 Rh6DG121800 Rh7AG302500 Rh7DG297300 Rh7DG364300 Rh7DG406700
rosa_wichuraiana	Rw1G008610 Rw2G014670 Rw5G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	25, 106
AasI	GACNNNNNNGTC	2 cut(s)	158, 388
Acc36I	ACCTGC	3 cut(s)	25, 106, 183
AccII	CGCG	2 cut(s)	197, 248
AciI	CCGC	7 cut(s)	147, 195, 238, 248, 303, 333, 413
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	2 cut(s)	92, 350
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	3 cut(s)	247, 342, 366
AgeI	ACCGGT	1 cut(s)	115
AhdI	GACNNNNNGTC	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	359
AleI	CACNNNNGTG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	323, 408
AluI	AGCT	2 cut(s)	323, 408
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	3 cut(s)	92, 350, 357
AsiGI	ACCGGT	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	4, 11, 235
AsuC2I	CCSGG	2 cut(s)	289, 342
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	3 cut(s)	4, 11, 235
BbsI	GAAGAC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	324
BccI	CCATC	2 cut(s)	149, 245
BceAI	ACGGC	2 cut(s)	169, 373
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	361
BcnI	CCSGG	2 cut(s)	289, 342
BcoDI	GTCTC	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	3 cut(s)	25, 106, 183
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	3 cut(s)	289, 342, 361
Bme18I	GGWCC	3 cut(s)	4, 11, 235
BmeRI	GACNNNNNGTC	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	4, 11, 235
BmiI	GGNNCC	2 cut(s)	157, 387
BmrFI	CCNGG	3 cut(s)	289, 342, 361
BoxI	GACNNNNGTC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	289, 342
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	5 cut(s)	7, 231, 241, 288, 341
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 342, 366
Bse118I	RCCGGY	3 cut(s)	90, 115, 352
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	5 cut(s)	7, 231, 241, 288, 341
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	3 cut(s)	247, 342, 366
BseMII	CTCAG	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	265
Bsh1236I	CGCG	2 cut(s)	197, 248
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	94, 352, 359
BshTI	ACCGGT	1 cut(s)	115
BsiEI	CGRYCG	1 cut(s)	120
BsiSI	CCGG	6 cut(s)	91, 116, 288, 306, 341, 353
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	247, 342, 366
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	94, 352, 359
Bsp119I	TTCGAA	1 cut(s)	71
Bsp143I	GATC	3 cut(s)	201, 217, 312
BspACI	CCGC	7 cut(s)	147, 195, 238, 248, 303, 333, 413
BspANI	GGCC	3 cut(s)	94, 352, 359
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	2 cut(s)	197, 248
BspLI	GGNNCC	2 cut(s)	157, 387
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	3 cut(s)	25, 106, 183
BspPI	GGATC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	71
BsrFI	RCCGGY	3 cut(s)	90, 115, 352
BssAI	RCCGGY	3 cut(s)	90, 115, 352
BssECI	CCNNGG	5 cut(s)	7, 231, 241, 288, 341
BssMI	GATC	3 cut(s)	201, 217, 312
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	7, 231
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	84, 359
BstACI	GRCGYC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	324
BstEII	GGTNACC	1 cut(s)	328
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	2 cut(s)	197, 248
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	3 cut(s)	204, 220, 315
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	3 cut(s)	201, 217, 312
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	361
BstPAI	GACNNNNGTC	1 cut(s)	9
BstPI	GGTNACC	1 cut(s)	328
BstSCI	CCNGG	3 cut(s)	287, 340, 359
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	2 cut(s)	197, 248
BstV2I	GAAGAC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	94, 352, 359
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	2 cut(s)	63, 282
BtsIMutI	CAGTG	2 cut(s)	63, 282
BveI	ACCTGC	3 cut(s)	25, 106, 183
Cac8I	GCNNGC	1 cut(s)	259
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	3 cut(s)	90, 115, 352
Cfr13I	GGNCC	3 cut(s)	4, 11, 235
CseI	GACGC	2 cut(s)	27, 112
CspAI	ACCGGT	1 cut(s)	115
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	9 cut(s)	27, 76, 94, 156, 323, 352, 359, 388, 408
CviKI_1	RGCY	9 cut(s)	27, 76, 94, 156, 323, 352, 359, 388, 408
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	3 cut(s)	203, 219, 314
DpnII	GATC	3 cut(s)	201, 217, 312
DrdI	GACNNNNNNGTC	2 cut(s)	158, 388
DriI	GACNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	2 cut(s)	158, 388
EaeI	YGGCCR	2 cut(s)	92, 350
Eam1104I	CTCTTC	2 cut(s)	84, 359
Eam1105I	GACNNNNNGTC	1 cut(s)	116
EarI	CTCTTC	2 cut(s)	84, 359
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	7, 231
Eco47I	GGWCC	3 cut(s)	4, 11, 235
Eco91I	GGTNACC	1 cut(s)	328
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoO65I	GGTNACC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	2 cut(s)	7, 231
ErhI	CCWWGG	2 cut(s)	7, 231
FaeI	CATG	1 cut(s)	51
FaiI	YATR	1 cut(s)	49
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	47
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	303
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	3 cut(s)	94, 352, 359
HapII	CCGG	6 cut(s)	91, 116, 288, 306, 341, 353
HgaI	GACGC	2 cut(s)	27, 112
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	68, 265
HpaII	CCGG	6 cut(s)	91, 116, 288, 306, 341, 353
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	3 cut(s)	164, 217, 394
Hpy188III	TCNNGA	2 cut(s)	221, 269
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	2 cut(s)	128, 394
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	20, 101, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	51
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	201, 217, 312
LmnI	GCTCC	5 cut(s)	161, 187, 254, 385, 405
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	3 cut(s)	203, 219, 314
MboI	GATC	3 cut(s)	201, 217, 312
MboII	GAAGA	3 cut(s)	71, 124, 376
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	9 cut(s)	46, 54, 87, 148, 251, 265, 319, 360, 372
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	6 cut(s)	91, 116, 288, 306, 341, 353
MspR9I	CCNGG	3 cut(s)	289, 342, 361
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	2 cut(s)	197, 248
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	2 cut(s)	289, 342
NdeII	GATC	3 cut(s)	201, 217, 312
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	157, 387
NmeAIII	GCCGAG	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	33
PaqCI	CACCTGC	2 cut(s)	25, 106
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	359
PspEI	GGTNACC	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	157, 387
PspPI	GGNCC	3 cut(s)	4, 11, 235
PstI	CTGCAG	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	201, 217, 312
Sau96I	GGNCC	3 cut(s)	4, 11, 235
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	3 cut(s)	289, 342, 361
SetI	ASST	7 cut(s)	13, 19, 100, 177, 325, 330, 410
SfcI	CTRYAG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	3 cut(s)	4, 11, 235
SmiMI	CAYNNNNRTG	1 cut(s)	33
SsiI	CCGC	7 cut(s)	147, 195, 238, 248, 303, 333, 413
StyD4I	CCNGG	3 cut(s)	287, 340, 359
StyI	CCWWGG	2 cut(s)	7, 231
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	71, 171
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	2 cut(s)	63, 289
TspGWI	ACGGA	2 cut(s)	148, 398
TspRI	CASTG	2 cut(s)	63, 289
VpaK11BI	GGWCC	3 cut(s)	4, 11, 235
XagI	CCTNNNNNAGG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.